Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,651,261 – 11,651,381 |
Length | 120 |
Max. P | 0.995439 |
Location | 11,651,261 – 11,651,381 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.97 |
Mean single sequence MFE | -31.70 |
Consensus MFE | -28.48 |
Energy contribution | -28.72 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -1.97 |
Structure conservation index | 0.90 |
SVM decision value | 2.58 |
SVM RNA-class probability | 0.995439 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11651261 120 + 27905053 CCCGAAAUGUAAUCAUAAAUCAGUUGGAUGUGGGCGACUGAAGAGCCCAGCAUCGAACAUGUUCCAACGCAUUUUUCCCUUUGCCUUUUUAUUUUAUUUUUCGGAAACCAACGCAUUUCU .((((((.((((..(((((...(((((((((((((.........))))).))))(((....)))))))(((..........)))...))))).)))).))))))................ ( -29.10) >DroSec_CAF1 32039 119 + 1 CCCGAAACGUAAUCAUAAAUCAGUUGGAUGUGGGCGACUGGAGAGCCCAGCAUCGAACAUGUUCCAACGCAUUUU-GCCUUUGCCUUUAUAUUUUAUUUUUCGGAAACCAACGCAUUUCU .((((((.((((..(((((...((((((((((..(((((((.....))))..)))..)))).))))))(((....-.....))).)))))...)))).))))))................ ( -31.70) >DroSim_CAF1 34239 119 + 1 CCCGAAACGUAAUCAUAAAUCAGUUGGAUGUGGGCGACUGGAGAGCCCAGCAUCGAACAUGUUCCAACGCAUUUU-GCCUUUGCCUUUUUAUUUUAUUUUUCGGAAACCAACGCAUUUCU .((((((.((((..(((((...((((((((((..(((((((.....))))..)))..)))).))))))(((....-.....)))...))))).)))).))))))................ ( -31.60) >DroEre_CAF1 30058 118 + 1 CCCGAAAUAUAAUCAUAAAUCAGUUGGAUGUGGGCGACUGGAGAGCCCAGCAUCGAACAUGUUCCAACGCAUUUU-GCCGUUGCGUUU-UCUUUUAUUUUUCGGAAACCAACGCAUUUCU ...(((((..............((((((((((..(((((((.....))))..)))..)))).)))))).......-((.((((.((((-((...........))))))))))))))))). ( -33.10) >DroYak_CAF1 32744 118 + 1 CCCGAAAUGUAAUCAUAAAUCAGUUGGAUGUGGGCGACUGAAGGGCCCAGCAUCGAACAUGUUCCAACGCAUUUU-GCCUGUGCGUUU-UCUUUUAUUUUUCGGUAACCAACGCAUUUCU .((((((.((((..........(((.(((((((((..(....).))))).)))).))).......(((((((...-....))))))).-....)))).))))))................ ( -33.00) >consensus CCCGAAAUGUAAUCAUAAAUCAGUUGGAUGUGGGCGACUGGAGAGCCCAGCAUCGAACAUGUUCCAACGCAUUUU_GCCUUUGCCUUU_UAUUUUAUUUUUCGGAAACCAACGCAUUUCU .((((((.((((..........((((((((((..(((((((.....))))..)))..)))).))))))(((..........))).........)))).))))))................ (-28.48 = -28.72 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:39 2006