Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,650,479 – 11,650,599 |
Length | 120 |
Max. P | 0.627920 |
Location | 11,650,479 – 11,650,599 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.92 |
Mean single sequence MFE | -42.02 |
Consensus MFE | -34.34 |
Energy contribution | -35.10 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.13 |
Mean z-score | -1.42 |
Structure conservation index | 0.82 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.627920 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11650479 120 - 27905053 UUGUAAGGCAACUUCUUGCGAUAAUUCACCUGUCGCAGGCACGUGCUCGCCUGGAUUUAUCCCACGUGGUCAGUCCGCAGCACGUGCGCGAUGUGAUCGCCCUGCUGACCGAGAGCAUCA .......((......((((((((.......))))))))(((((((((.((..(((((.(((......))).))))))))))))))))))(((((..(((..(....)..)))..))))). ( -45.50) >DroSec_CAF1 31265 120 - 1 UUGUAAGGCAACUUCUUGGGAUAAUUCACCUGUCCCAGGCACGUGCUCGCCUGGAUUUAUCCCAGGUGGUCAGUCCGCAGCACGUACGCGAUGUGAUCGCCCUGCUGACCGAGAGCAUCA ....(((....)))(((((((((.......)))))))))...((((((((((((.......))))))(((((((..((..(((((.....)))))...))...)))))))..)))))).. ( -49.00) >DroSim_CAF1 33449 120 - 1 UUGUAAGGCAACUUCUUGGGAUAAUUCACCUGUCCCAGGCACGUGCUCGCCUGGAUCUAUCCCACGUGGUCAGUCCGCAGCACGUGCGCGAUGUGAUCGCCCUGCUGACGGAGAGCAUCA ....(((....)))(((((((((.......)))))))))...((((((((((((.......)))...)))...(((((((((.(.(.(((((...)))))))))))).)))))))))).. ( -43.30) >DroEre_CAF1 29278 120 - 1 UUUCAAGGCAACUUCUUGGGAUAAUUCACCUGUCCCAGGCACGUGCUCGUCUGGAUUUGUCCCACGUGGUCAGUCUCCAUCACGUGCGCGAUGUGAUCGCCCUGCUGACGGAGAGCAUCA ....(((....)))(((((((((.......)))))))))...((((((.((((.........((((((((........)))))))).(((((...)))))........)))))))))).. ( -39.50) >DroYak_CAF1 31958 120 - 1 UUUUAAGACAACUUCUUGGGAUAAUUCACCUGUCCCAGGCACGUGCUCGUCUGGAUUUGUCCCACGUCGUCAGUUCAAAGCAUGUACGCGAUGUGAUCGCCCUGCUGACCGAGAGCAUCA ..............(((((((((.......))))))))).(((((((...((((...((.....))...)))).....)))))))....(((((..(((..(....)..)))..))))). ( -32.80) >consensus UUGUAAGGCAACUUCUUGGGAUAAUUCACCUGUCCCAGGCACGUGCUCGCCUGGAUUUAUCCCACGUGGUCAGUCCGCAGCACGUGCGCGAUGUGAUCGCCCUGCUGACCGAGAGCAUCA ....(((....))).((((((((.......))))))))(((((((((.((..(((((...((.....))..))))))))))))))))..(((((..(((..(....)..)))..))))). (-34.34 = -35.10 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:38 2006