Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,650,199 – 11,650,319 |
Length | 120 |
Max. P | 0.999939 |
Location | 11,650,199 – 11,650,319 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.08 |
Mean single sequence MFE | -33.02 |
Consensus MFE | -28.26 |
Energy contribution | -28.86 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.06 |
Mean z-score | -1.94 |
Structure conservation index | 0.86 |
SVM decision value | 1.63 |
SVM RNA-class probability | 0.968524 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11650199 120 + 27905053 UAGUCCGGAACCACUUCGUACAUGUUUGCGCCCUUCAUGAGCAAAUAGCCACCCAGGUUAGCCAUUUCCACCAGCUGGCUAAAGCCAGUCAAAAUGCCAGCCCGGGUUCCAAUUUCCUUU ......((((((.....((...(((((((...........)))))))...)).(.((((.((.((((......((((((....))))))..)))))).)))).))))))).......... ( -32.40) >DroSec_CAF1 30994 120 + 1 UAGUCCGGAACCACUUCGUACAUGUUUGCGCCCUUCAUGAGCAAAUAGCCACCCAGGUUUGCCAUUUCCACCAGCUGACUAAAGCCGGUCAAAAUGCCAGCCCGGGUUCCGAUUUCCUUU .....(((((((.....((...(((((((...........)))))))...))...((.(((.(((((..(((.(((......))).)))..))))).))).)).)))))))......... ( -35.00) >DroSim_CAF1 33178 120 + 1 UAGUCCGGAACCACUUCGUACAUGUUUGCGCCCUUCAUGAGCAAAUAGCCACCCAGAUUUGCCAUUUCCACCAGCUGGCUAAAGCCGGUCAAAAUGCCAGCCCGGGUUCCGAUUUCCUUU .....(((((((.((..((...(((((((...........)))))))...))..))..(((.(((((..(((.(((......))).)))..))))).)))....)))))))......... ( -31.50) >DroEre_CAF1 28998 120 + 1 UAGUCCGGAACCACUUCGUACAUGUUUGCGCCCUUCAUGAGCAAAUAUCCACCCAGGUUUGCCAUUUCCACCAUCUGGCUUAAGCCAGUCAAAAUGCCAGCCCGGGUUCCGAUUUCCUUU .....(((((((.....((..((((((((...........))))))))..))...((.(((.(((((.......(((((....)))))...))))).))).)).)))))))......... ( -33.80) >DroYak_CAF1 31678 120 + 1 CAGUCCGGAACCACUUCGUACAUGUUUGCGCCCUUCAUGAGCAAAUGGCCACCCAGGUUUGCCAUUUCCACCACCUGGCUUAAGCCGGUCAAAAUGCCAGCCCGGGUUCCGAUUUCCUUU .....(((((((...........((((((...........))))))(((......(((((((((...........))))..)))))(((......))).)))..)))))))......... ( -32.40) >consensus UAGUCCGGAACCACUUCGUACAUGUUUGCGCCCUUCAUGAGCAAAUAGCCACCCAGGUUUGCCAUUUCCACCAGCUGGCUAAAGCCGGUCAAAAUGCCAGCCCGGGUUCCGAUUUCCUUU .....(((((((.....((...(((((((...........)))))))...)).(.((((.((.((((......((((((....))))))..)))))).)))).))))))))......... (-28.26 = -28.86 + 0.60)
Location | 11,650,199 – 11,650,319 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.08 |
Mean single sequence MFE | -44.70 |
Consensus MFE | -42.40 |
Energy contribution | -42.48 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.10 |
Mean z-score | -2.77 |
Structure conservation index | 0.95 |
SVM decision value | 4.69 |
SVM RNA-class probability | 0.999939 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11650199 120 - 27905053 AAAGGAAAUUGGAACCCGGGCUGGCAUUUUGACUGGCUUUAGCCAGCUGGUGGAAAUGGCUAACCUGGGUGGCUAUUUGCUCAUGAAGGGCGCAAACAUGUACGAAGUGGUUCCGGACUA ........((((((((((((.(((((((((.((..(((......)))..)).))))).)))).))))))).(((((((((((.....))))(((....)))...)))))))))))).... ( -44.00) >DroSec_CAF1 30994 120 - 1 AAAGGAAAUCGGAACCCGGGCUGGCAUUUUGACCGGCUUUAGUCAGCUGGUGGAAAUGGCAAACCUGGGUGGCUAUUUGCUCAUGAAGGGCGCAAACAUGUACGAAGUGGUUCCGGACUA ........((((((((((((.((.((((((.(((((((......))))))).)))))).))..))))))).(((((((((((.....))))(((....)))...)))))))))))).... ( -48.10) >DroSim_CAF1 33178 120 - 1 AAAGGAAAUCGGAACCCGGGCUGGCAUUUUGACCGGCUUUAGCCAGCUGGUGGAAAUGGCAAAUCUGGGUGGCUAUUUGCUCAUGAAGGGCGCAAACAUGUACGAAGUGGUUCCGGACUA ........((((((((((((.((.((((((.(((((((......))))))).)))))).))..))))))).(((((((((((.....))))(((....)))...)))))))))))).... ( -45.60) >DroEre_CAF1 28998 120 - 1 AAAGGAAAUCGGAACCCGGGCUGGCAUUUUGACUGGCUUAAGCCAGAUGGUGGAAAUGGCAAACCUGGGUGGAUAUUUGCUCAUGAAGGGCGCAAACAUGUACGAAGUGGUUCCGGACUA ........(((((((((((..((.((((((.((((((....)))....))).)))))).))..))...(((.((.(((((((......)).))))).)).)))...).)))))))).... ( -39.90) >DroYak_CAF1 31678 120 - 1 AAAGGAAAUCGGAACCCGGGCUGGCAUUUUGACCGGCUUAAGCCAGGUGGUGGAAAUGGCAAACCUGGGUGGCCAUUUGCUCAUGAAGGGCGCAAACAUGUACGAAGUGGUUCCGGACUG ........((((((((((((.((.((((((.((((.((......)).)))).)))))).))..))))))).(((((((((((.....))))(((....)))...)))))))))))).... ( -45.90) >consensus AAAGGAAAUCGGAACCCGGGCUGGCAUUUUGACCGGCUUUAGCCAGCUGGUGGAAAUGGCAAACCUGGGUGGCUAUUUGCUCAUGAAGGGCGCAAACAUGUACGAAGUGGUUCCGGACUA ........((((((((((((.((.((((((.(((((((......))))))).)))))).))..))))))).(((((((((((.....))))(((....)))...)))))))))))).... (-42.40 = -42.48 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:37 2006