Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,647,672 – 11,647,792 |
Length | 120 |
Max. P | 0.974037 |
Location | 11,647,672 – 11,647,792 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -42.48 |
Consensus MFE | -37.30 |
Energy contribution | -37.14 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.15 |
Mean z-score | -1.67 |
Structure conservation index | 0.88 |
SVM decision value | 1.54 |
SVM RNA-class probability | 0.962406 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11647672 120 + 27905053 UCGGGAGACGGAGCUGUUUAUGCGAUUUGUCACCAACAUAGACAAUAUAGCUCAAGCUCCGAUGCAGCGGGAUCCGCUUAAGGAGCCGGUCGAUGCGGCUACCAUGCCGGAGCUUCCCGU .(((((....(((((((.........(((((.........))))).))))))).(((((((..(((((((...))))....(((((((.......))))).)).))))))))))))))). ( -48.90) >DroSec_CAF1 28516 120 + 1 UCGGGAGACGGAGCUGUUUAUGCGAUUUGUCACCAACAUAGAUAAUAUAGCUCAAGCUCCGAUGCAGCGGGAUCCGCUUAAAGAGCCUGCCGAUGCGGCUACCAUGCCGGAGCUUCCCGU .(((((....(((((((((((.(....(((.....)))..))))).))))))).((((((...((((((((.((........)).)))))...)))(((......)))))))))))))). ( -44.40) >DroSim_CAF1 30713 120 + 1 UCGGGAGACGGAGCUGUUUAUGCGAUUUGUCACCAACAUAGAUAAUAUAGCUCAAGCUCCGAUGCAGCGGGAUCCGCUUAAAGAGCCGGCCGAUGCGGCUACCAUGCCGGAGCUUCCCGU .(((((....(((((((((((.(....(((.....)))..))))).))))))).((((((...(((.(((...((((((...))).)))))).)))(((......)))))))))))))). ( -45.10) >DroEre_CAF1 26416 120 + 1 UCGCGAGACGGAACUAUUCAUGCGAUUUGUCACCAAUAUAGAUAACAUAGCUCAAGUUCCGAUGCCGCGGGAUCCGCUUAAGGAACCAGCCGAUGCGGCUACCAUGCCGGAGCUUCCCGU ((....))(((((((......((...(((((.........)))))....))...))))))).....((((((...((((..((......))....((((......)))))))).)))))) ( -36.50) >DroYak_CAF1 29004 120 + 1 UCGCGAGACGGAGCUGUUUAUGCGAUUUGUCACCAACAUAGAUAACAUAGCUCAAGUUCCGAUGCAACGGGAUCCACUUAAGGAACCAGUUGAUGCGGCUACCAUGCCGGAGCUUCCCGU ((....))(((((((((((((.(....(((.....)))..))))).)))))))((((((((...((((.((.(((......))).)).))))...)(((......))))))))))..)). ( -37.50) >consensus UCGGGAGACGGAGCUGUUUAUGCGAUUUGUCACCAACAUAGAUAAUAUAGCUCAAGCUCCGAUGCAGCGGGAUCCGCUUAAGGAGCCAGCCGAUGCGGCUACCAUGCCGGAGCUUCCCGU .((((((.(((((((......((...(((((.........)))))....))...)))))))..((.((.((.(((......))).)).))...(.((((......)))).))))))))). (-37.30 = -37.14 + -0.16)
Location | 11,647,672 – 11,647,792 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -43.28 |
Consensus MFE | -37.60 |
Energy contribution | -37.84 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.14 |
Mean z-score | -1.78 |
Structure conservation index | 0.87 |
SVM decision value | 1.72 |
SVM RNA-class probability | 0.974037 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11647672 120 - 27905053 ACGGGAAGCUCCGGCAUGGUAGCCGCAUCGACCGGCUCCUUAAGCGGAUCCCGCUGCAUCGGAGCUUGAGCUAUAUUGUCUAUGUUGGUGACAAAUCGCAUAAACAGCUCCGUCUCCCGA .((((((((((((((..((.(((((.......)))))))...(((((...)))))))..))))))).(((((.....((.(((((((....))....))))).)))))))....))))). ( -48.30) >DroSec_CAF1 28516 120 - 1 ACGGGAAGCUCCGGCAUGGUAGCCGCAUCGGCAGGCUCUUUAAGCGGAUCCCGCUGCAUCGGAGCUUGAGCUAUAUUAUCUAUGUUGGUGACAAAUCGCAUAAACAGCUCCGUCUCCCGA .((((((((((((((..((.((((((....)).))))))...(((((...)))))))..))))))).(((((...((((.....(((....))).....))))..)))))....))))). ( -45.60) >DroSim_CAF1 30713 120 - 1 ACGGGAAGCUCCGGCAUGGUAGCCGCAUCGGCCGGCUCUUUAAGCGGAUCCCGCUGCAUCGGAGCUUGAGCUAUAUUAUCUAUGUUGGUGACAAAUCGCAUAAACAGCUCCGUCUCCCGA .((((((((((((((..((.((((((....).)))))))...(((((...)))))))..))))))).(((((...((((.....(((....))).....))))..)))))....))))). ( -45.60) >DroEre_CAF1 26416 120 - 1 ACGGGAAGCUCCGGCAUGGUAGCCGCAUCGGCUGGUUCCUUAAGCGGAUCCCGCGGCAUCGGAACUUGAGCUAUGUUAUCUAUAUUGGUGACAAAUCGCAUGAAUAGUUCCGUCUCGCGA ..((((...((((....((((((((...))))))...)).....))))))))((((...(((((((...((..(((((((......)))))))....))......)))))))..)))).. ( -41.00) >DroYak_CAF1 29004 120 - 1 ACGGGAAGCUCCGGCAUGGUAGCCGCAUCAACUGGUUCCUUAAGUGGAUCCCGUUGCAUCGGAACUUGAGCUAUGUUAUCUAUGUUGGUGACAAAUCGCAUAAACAGCUCCGUCUCGCGA .((.((..(((((((......)))....((((.((.(((......))).)).))))....)))....(((((...((((.....(((....))).....))))..))))).)..)).)). ( -35.90) >consensus ACGGGAAGCUCCGGCAUGGUAGCCGCAUCGGCCGGCUCCUUAAGCGGAUCCCGCUGCAUCGGAGCUUGAGCUAUAUUAUCUAUGUUGGUGACAAAUCGCAUAAACAGCUCCGUCUCCCGA .((((((((((((((......)))(((...((.((.(((......))).)).)))))...)))))).(((((...((((.....(((....))).....))))..)))))....))))). (-37.60 = -37.84 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:30 2006