Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,647,512 – 11,647,632 |
Length | 120 |
Max. P | 0.997819 |
Location | 11,647,512 – 11,647,632 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.50 |
Mean single sequence MFE | -36.22 |
Consensus MFE | -33.52 |
Energy contribution | -33.76 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -1.95 |
Structure conservation index | 0.93 |
SVM decision value | 2.94 |
SVM RNA-class probability | 0.997819 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11647512 120 + 27905053 ACAUGCGCAUCAUUAUUACCUCGGGUCCCAUAGCCAGUGAUGUGACUGUCAUUUAUGGACCAUUUUUGGCGCACACAGUGCGCAUCUUCAACACGAGAACUCAUCUGGAUGCAGCGAUAU ...((((((((........(((((((((.((((...(((((......)))))))))))))).......((((((...))))))..........))))..........))))).))).... ( -36.17) >DroSec_CAF1 28356 120 + 1 ACAUGCGCAUCAUUAUCACCUCGGGUCCCAUAGCCAGUGAUGUGACUGUCAUUUAUGGACCCUUUUUGGCGCACACGGUGCGCAUCUUCAACACGAGAACUCACCUGGAUGCAGCGAUAU ...((((((((........(((((((((.((((...(((((......)))))))))))))))......((((((...))))))...........)))..........))))).))).... ( -37.07) >DroSim_CAF1 30553 120 + 1 ACAUGCGCAUCAUUAUCACCUCGGGUCCCAUAGCCAGUGAUGUGACUGUCAUUUAUGGACCCUUUUUAGCGCACACGGUGCGCAUCUUCAACACGAGAACUCACCUGGAUGCAGCGAUAU ...((((((((........(((((((((.((((...(((((......)))))))))))))))......((((((...))))))...........)))..........))))).))).... ( -37.27) >DroEre_CAF1 26256 120 + 1 ACAUGCGCAUCAUUAUCACCUCGGGUCCAAUAGCCAGUGAUGUGACUGUCAUUUAUGGACCCUUUUUGGCGCACACGGUGCGCAUCUUUAACACGAGAACUCACCUGGAUGCAGCGAUAU ...((((((((........((((((((((.(((...(((((......)))))))))))))))......((((((...))))))...........)))..........))))).))).... ( -37.07) >DroYak_CAF1 28844 120 + 1 ACGUGCGCAUCAUUAUCACCUCGGGUCCAAUAGCUAGCGAUGUGACUGUCAUUUAUGGACCCUUUUUGGCGCACACAGUGCGCAUCUUUAAUACAAGAACUCACCUAGAUGCAGCCAUUU ..(.(((((((...........(((((((...(....)(((......))).....)))))))......((((((...)))))).((((......)))).........))))).))).... ( -33.50) >consensus ACAUGCGCAUCAUUAUCACCUCGGGUCCCAUAGCCAGUGAUGUGACUGUCAUUUAUGGACCCUUUUUGGCGCACACGGUGCGCAUCUUCAACACGAGAACUCACCUGGAUGCAGCGAUAU ....(((((((...........((((((.((((...(((((......)))))))))))))))......((((((...)))))).((((......)))).........))))).))..... (-33.52 = -33.76 + 0.24)
Location | 11,647,512 – 11,647,632 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.50 |
Mean single sequence MFE | -38.14 |
Consensus MFE | -35.42 |
Energy contribution | -35.50 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.07 |
Mean z-score | -1.43 |
Structure conservation index | 0.93 |
SVM decision value | 1.31 |
SVM RNA-class probability | 0.940045 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11647512 120 - 27905053 AUAUCGCUGCAUCCAGAUGAGUUCUCGUGUUGAAGAUGCGCACUGUGUGCGCCAAAAAUGGUCCAUAAAUGACAGUCACAUCACUGGCUAUGGGACCCGAGGUAAUAAUGAUGCGCAUGU .....((.(((((...((....(((((..........((((((...)))))).......(((((....(((.((((......))))..))).))))))))))..))...))))))).... ( -35.20) >DroSec_CAF1 28356 120 - 1 AUAUCGCUGCAUCCAGGUGAGUUCUCGUGUUGAAGAUGCGCACCGUGUGCGCCAAAAAGGGUCCAUAAAUGACAGUCACAUCACUGGCUAUGGGACCCGAGGUGAUAAUGAUGCGCAUGU ...(((((.......)))))...............(((((((.(((...((((.....((((((....(((.((((......))))..))).))))))..))))...))).))))))).. ( -39.30) >DroSim_CAF1 30553 120 - 1 AUAUCGCUGCAUCCAGGUGAGUUCUCGUGUUGAAGAUGCGCACCGUGUGCGCUAAAAAGGGUCCAUAAAUGACAGUCACAUCACUGGCUAUGGGACCCGAGGUGAUAAUGAUGCGCAUGU .....((.(((((...((.(.(((.............((((((...))))))......((((((....(((.((((......))))..))).))))))))).).))...))))))).... ( -38.90) >DroEre_CAF1 26256 120 - 1 AUAUCGCUGCAUCCAGGUGAGUUCUCGUGUUAAAGAUGCGCACCGUGUGCGCCAAAAAGGGUCCAUAAAUGACAGUCACAUCACUGGCUAUUGGACCCGAGGUGAUAAUGAUGCGCAUGU ...(((((.......)))))...............(((((((.(((...((((.....(((((((.......((((......)))).....)))))))..))))...))).))))))).. ( -39.90) >DroYak_CAF1 28844 120 - 1 AAAUGGCUGCAUCUAGGUGAGUUCUUGUAUUAAAGAUGCGCACUGUGUGCGCCAAAAAGGGUCCAUAAAUGACAGUCACAUCGCUAGCUAUUGGACCCGAGGUGAUAAUGAUGCGCACGU ..(((((.(((((...((.(.(((.............((((((...))))))......(((((((.....(..(((......)))..)...)))))))))).).))...))))))).))) ( -37.40) >consensus AUAUCGCUGCAUCCAGGUGAGUUCUCGUGUUGAAGAUGCGCACCGUGUGCGCCAAAAAGGGUCCAUAAAUGACAGUCACAUCACUGGCUAUGGGACCCGAGGUGAUAAUGAUGCGCAUGU .....((.(((((...((.(.(((.............((((((...))))))......((((((........((((......))))......))))))))).).))...))))))).... (-35.42 = -35.50 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:28 2006