Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,671,971 – 1,672,091 |
Length | 120 |
Max. P | 0.704472 |
Location | 1,671,971 – 1,672,091 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.58 |
Mean single sequence MFE | -38.00 |
Consensus MFE | -16.48 |
Energy contribution | -16.84 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.47 |
Mean z-score | -1.88 |
Structure conservation index | 0.43 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.704472 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1671971 120 + 27905053 UUCUUCUAUCCCAGCCUAGAUGCCUUGGGCUCCUACUAUGCCUUCUGGCUCUUCGCUGUCUGCAUGGUGGUGGCCUUCUUCUUCGUCCUCUUCGUGGUGAUGGAGACAAAGGGGCUUAGU ....((((........)))).(((((((((..(((((((((.....(((.....)))....)))))))))..))))...((((((((.((.....)).))))))))....)))))..... ( -39.60) >DroGri_CAF1 1683 120 + 1 CGCUAUUAUCCGGCACUAGAUGCUCUCGGCUCAUAUUAUGCAUUUUGGCUUUUUGCCUUUUUCUGUGUGGUGGCCUUCUUCUUUGUCCUGUUUGUCGUCAUGGAAACGAAGGGGCUGAGU ...........((((.....))))((((((((.(((((((((....(((.....)))......))))))))).....((((....(((((........)).)))...)))))))))))). ( -31.10) >DroEre_CAF1 1233 120 + 1 UUCUUUUAUCCCAGCCUAGAUGCUCUGGGCUCCUACUACGCCUUCUGGCUCUUCGCCGGCUGCAUGGUAGUGGCCUUCUUCUUCGUGCUCUUCAUUGUGAUGGAGACGAAGGGCCUCAGU ............(((((((.....))))))).((((((.((...(((((.....)))))..)).)))))).(((((((.(((((((((........)).))))))).))).))))..... ( -43.90) >DroMoj_CAF1 1436 120 + 1 CGCUACUAUCCGGCACUUGAUGCACUUGGCUCCUACUAUGCAUUCUGGCUCUUCUCCGGAUUCUGCAUAGUAGCAUUUUUCUUUGUCAUGUUCAUCGUCGUAGAGACCAAGGGCUUGAGC .(((.......))).((..(.((.(((((...((((((((((.(((((.......)))))...))))))))))......((((((..(((.....)))..))))))))))).)))..)). ( -37.60) >DroAna_CAF1 1258 120 + 1 UACUUCUACCCCAGCUUGGAUGCUCUCGGCUCUUACUAUGCCUUCUGGCUAUUCGGCGGCUGCAUGAUUGUGGCCUUCUUCUUUGUCCUAUUUGUGGUGAUGGAGACGAAGGGUCUUAGC ..((...((((..(((.(((((((...(((.........)))....))).)))))))(((..((....))..)))(((.((((..(((((....))).))..)))).)))))))...)). ( -37.80) >consensus UGCUUCUAUCCCAGCCUAGAUGCUCUCGGCUCCUACUAUGCCUUCUGGCUCUUCGCCGGCUGCAUGGUAGUGGCCUUCUUCUUUGUCCUCUUCGUCGUGAUGGAGACGAAGGGCCUGAGU ........................((((((..(((((((((...(((((.....)))))..))...)))))))(((((.(((((((.............))))))).)))))).))))). (-16.48 = -16.84 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:17 2006