Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,644,957 – 11,645,077 |
Length | 120 |
Max. P | 0.563424 |
Location | 11,644,957 – 11,645,077 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.58 |
Mean single sequence MFE | -34.48 |
Consensus MFE | -29.16 |
Energy contribution | -29.72 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.10 |
Mean z-score | -1.27 |
Structure conservation index | 0.85 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.563424 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11644957 120 + 27905053 CAGCAACUUGUGAUCGCCUCAAACCAAAAGAAAUCCUCGGAAACAAAGUCGGCGCAAACAUCGGUAUCGCCGGAGGAGCAAUCAGAGGAGCAGUACACCAACAGCAAUUGGGGCGACAAG ......((((...(((((((((...........((((((....)....((((((...((....))..))))))..((....)).)))))((.((......)).))..))))))))))))) ( -36.60) >DroSec_CAF1 25809 120 + 1 CAGCACCUUGUGAUCGCCUCAAAUCAAAAGAGAUCCUCGGAAACAAAGUCGGCGCAAACAUCGGUAUCGCCGGAGGAGCAAUCAGAGGAGCAGUACACCAACAGCGAUUGGGGCGACAAG ......((((...(((((((((.((....((..((((((....).....(((((...((....))..))))))))))....))......((.((......)).))))))))))))))))) ( -37.50) >DroSim_CAF1 27995 120 + 1 CAGCACCUUGUGAUCGCCUCAAAUCAAAAGAGAUCAUCGGAAACAAAGUCGGCGCAAACAUCGGUAUCGCCGGAGGAGCAAUCAGAGGAGCAGUACACCAACAGCGAUUGGGGCGACAAG ......((((...(((((((((.((......(((..(((....)....((((((...((....))..))))))..))...)))......((.((......)).))))))))))))))))) ( -31.00) >DroEre_CAF1 23704 120 + 1 CAGCACAUUGUGAUCGCCUCAAACCAAAAGAGAUCCUCGGAAACAAAGUCGGGACAGACAUCGGGAUCGCCGGAGGUGCAGUCAGAGGAGCAGUACACCAACACUAAUUGGGGCGACAAG ..........((.(((((((((.........((((((.(....)...(((......)))...))))))...((..((((.((.......)).)))).))........))))))))))).. ( -34.30) >DroYak_CAF1 26295 120 + 1 CAGCAUAUGGUGAUCGCCUCAAACCAAAAGCGAUCAUCGGAAACAAAGUCGGCGCAACCAUCGGGAUCGCCGGAAGUUCAAUCAGAGGAGCAGUACACCAACGGUAAUUGGGGUGACAAG ........(((((((((............)))))))))(....)....((((((...((....))..))))))..((((........)))).((.((((............))))))... ( -33.00) >consensus CAGCACCUUGUGAUCGCCUCAAACCAAAAGAGAUCCUCGGAAACAAAGUCGGCGCAAACAUCGGUAUCGCCGGAGGAGCAAUCAGAGGAGCAGUACACCAACAGCAAUUGGGGCGACAAG ..........((.(((((((((...........((((((....)....((((((...((....))..))))))...........)))))((.((......)).))..))))))))))).. (-29.16 = -29.72 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:19 2006