Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,641,659 – 11,641,768 |
Length | 109 |
Max. P | 0.569011 |
Location | 11,641,659 – 11,641,768 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 94.06 |
Mean single sequence MFE | -19.88 |
Consensus MFE | -17.08 |
Energy contribution | -17.45 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.08 |
Mean z-score | -1.54 |
Structure conservation index | 0.86 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.569011 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11641659 109 + 27905053 AUUUUUGAACUGAAUUUACGUUCACAGUU-CUGCCUUCUGUCCUUUUUCUUGGCCUUCUUUUUCGGCCUUCUAAGGUGAUUGCAGUGACUUUCAAUUAACUUUUUGCCAG ....(((((.(((((....))))).((((-((((..((...((((......((((.........))))....)))).))..)))).)))))))))............... ( -23.00) >DroSec_CAF1 22555 109 + 1 AUUUUUGAACUGAAUUUACUUUCACAGCU-CUGCCUUCUGGCCUCUUUCUUGGCCUUCUUUUUCGGUCUUCUUAGGUGAUUGCAGUGACUUUCAAUUAACUUUUUGCCAG ....((((((((...((((((....((..-(((......((((........))))........))).))....))))))...)))).....))))............... ( -17.94) >DroSim_CAF1 24647 109 + 1 AUUUUUGAACUGAAUUUACGUUCACAGUU-CUGCCUUCUGUCCUCUUUCUUGGCCUUCUUUUUCGGCCUUCUUAGGUGAUUGCAGUGACUUUCAAUUAACUUUUUGCCAG ....(((((.(((((....))))).((((-((((..((...(((.......((((.........)))).....))).))..)))).)))))))))............... ( -21.20) >DroYak_CAF1 23070 109 + 1 AUUUUUAAACUGAAUUUACGUUCACAGUUGCCGCCUUCUGUCCUCUUUCUUGGCCUUCUUUUUCGGCUUUCUUAGGUGAUUGCAGUGACUUUCAAUUAAUUUUUU-CAAG ..........(((((....))))).(((..(.((..((...(((.......((((.........)))).....))).))..)).)..)))...............-.... ( -17.40) >consensus AUUUUUGAACUGAAUUUACGUUCACAGUU_CUGCCUUCUGUCCUCUUUCUUGGCCUUCUUUUUCGGCCUUCUUAGGUGAUUGCAGUGACUUUCAAUUAACUUUUUGCCAG ....(((((.((((......)))).((((.((((..((...(((.......((((.........)))).....))).))..)))).)))))))))............... (-17.08 = -17.45 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:15 2006