Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,634,615 – 11,634,839 |
Length | 224 |
Max. P | 0.691700 |
Location | 11,634,615 – 11,634,731 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.54 |
Mean single sequence MFE | -28.10 |
Consensus MFE | -21.31 |
Energy contribution | -21.87 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.12 |
Mean z-score | -2.90 |
Structure conservation index | 0.76 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.691700 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11634615 116 + 27905053 AGUUCGCAGACCAA----UGCCAAAGUAAAGAUUUCCACGUUGUGGCUGUAACGGAACCAAAAUGGGUUCGCCAAUAGCCAAAGACGUUCAAGAACUUUACAACAAAUAAAGAAAAAUAU ..((((((......----)))....((((((.(((..(((((.(((((((....(((((......)))))....)))))))..)))))...))).))))))..........)))...... ( -29.80) >DroSec_CAF1 15765 115 + 1 AGUUCGUAGACCAA----UGCCAAAGUAAAGAUUUCCACGUUGUGGCUGUAAAGGAACCAAAAUGGGUUCGCCAAUAGCCAAAGACGUUCAAGAACUUUACAACAAAUAAAGAA-AAUAU ..((((((......----)))....((((((.(((..(((((.(((((((....(((((......)))))....)))))))..)))))...))).))))))..........)))-..... ( -27.80) >DroSim_CAF1 13063 115 + 1 AGUUCGCAGACCAA----UGCCCAAGUAAAGAUUUCCACGUUGUGGCUGUAAAGGAACCGAAAUGGGUUCGCCAAUAGCCAAAAACGUUCAAGAACUUUACAACAAAUAAAGAA-AAUAU ..((((((......----)))....((((((.(((..(((((.(((((((....(((((......)))))....)))))))..)))))...))).))))))..........)))-..... ( -29.60) >DroEre_CAF1 13674 113 + 1 AGUUCGCAGAUUAA----UGCCAAAGUAAAGAUUUCCACGUUGUGGCAGUAAAGGAACCAAAAUGGCUUCGCCAAUAGCCAAAGACGUUCAAGAACUUUACAACAAAU--AAAG-AAUAU .(((((((......----)))....((((((.(((..(((((.((((......(....)....((((...))))...))))..)))))...))).)))))).......--...)-))).. ( -25.10) >DroYak_CAF1 16146 115 + 1 AGUUCGCAGACUAA----UGCCGAAGUAAAGAUUUCCACGUUGUGGCUGUAAAGGAACCGAAAUGGGUUCGCCAGUAGCCAAAGACGUUCAAGAACUUUACAACAAAUUAAAAA-AAUAU ..((((((......----)).))))((((((.(((..(((((.((((((.....(((((......))))).....))))))..)))))...))).)))))).............-..... ( -28.60) >DroAna_CAF1 14852 119 + 1 AGUUCGCAGAUUAAGAGAUUUCGAAGUAAAGAUUUCCACGUUGUGGCUGCAAGGAACAUAAAAUUAGUUCGCCAAAAGCCAACAACGUUCAAGAACUUUACAACAAUAUUACAU-UUUCU ..((((.(((((....)))))))))((((((.(((..(((((((((((....(((((.........)))).)....)))).)))))))...))).)))))).............-..... ( -27.70) >consensus AGUUCGCAGACCAA____UGCCAAAGUAAAGAUUUCCACGUUGUGGCUGUAAAGGAACCAAAAUGGGUUCGCCAAUAGCCAAAGACGUUCAAGAACUUUACAACAAAUAAAGAA_AAUAU .........................((((((.(((..(((((.(((((((....(((((......)))))....)))))))..)))))...))).))))))................... (-21.31 = -21.87 + 0.56)
Location | 11,634,731 – 11,634,839 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 77.06 |
Mean single sequence MFE | -14.91 |
Consensus MFE | -1.36 |
Energy contribution | -1.24 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.33 |
Mean z-score | -1.42 |
Structure conservation index | 0.09 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.560716 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11634731 108 - 27905053 UUUGCUUUUUUGAGGUAUUCCUUUCA----ACUACUUUCACAGCUCCUUA--AAAAUUCAUUUG--UGCUGU-UCA-UUUCCACUAUCUUUUAUGAGAUUUUAGUUUGUACAUACAUA ..((..(((((((((...........----...............)))))--))))..))..((--((.(((-.((-........(((((....))))).......)).))))))).. ( -14.03) >DroSec_CAF1 15880 105 - 1 UUUGC-UUUUUAAGGUGUUCCUUUUA----ACCACUUUCACAGCUCCUUA--AAAAUUCAUUUGUGUGCAGU-UCA-UUUCCACUAUCUUUUAUGGCAUUUCAGUUUGCAC----AUA .....-(((((((((.(((.......----...........))).)))))--))))......(((((((((.-...-...(((.((.....))))).........))))))----))) ( -17.86) >DroSim_CAF1 13178 106 - 1 UUUGCCUUUUUAAGGUGUUCCUUUUA----ACCACUUUCACAGCUCUUUA--AAAAUUCAUUUGUGUGCCGU-UCA-UUUCCACUAUCUUUUAUGGCAUUUCAGUUUGCAC----AUA ..(((.(((((((((.(((.......----...........))).)))))--)))).....(((.(((((((-...-...............)))))))..)))...))).----... ( -14.64) >DroEre_CAF1 13787 108 - 1 UUUGCCUUUAUAAGCUGUUCUUUUCA----ACCACUUUCACAGCUCCUAAAAAAAGUUAUUUUGUGUGCAGC-UCG-UUUACACCUUCUUUUAUAGCACUUCAGUUUGCAC----AUA ......((((..((((((........----.........))))))..))))...........((((((((((-(..-.................)))((....)).)))))----))) ( -14.74) >DroYak_CAF1 16261 103 - 1 ---------UUAAAAUGUUAUUUGCAACCAACCACUUACACAACUACUUA--AAAGUUAUUUCAUGUGCACUAUUGUGUUCCACUAUCUUUUAUGGCAUUUCAGUUUGCAC----AUA ---------......(((.....)))...............((((.....--..)))).....(((((((..((((.((.(((.((.....))))).))..)))).)))))----)). ( -13.30) >consensus UUUGC_UUUUUAAGGUGUUCCUUUCA____ACCACUUUCACAGCUCCUUA__AAAAUUCAUUUGUGUGCAGU_UCA_UUUCCACUAUCUUUUAUGGCAUUUCAGUUUGCAC____AUA ...............................................................................................(((........)))......... ( -1.36 = -1.24 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:11 2006