Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,633,966 – 11,634,078 |
Length | 112 |
Max. P | 0.509898 |
Location | 11,633,966 – 11,634,078 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.09 |
Mean single sequence MFE | -35.17 |
Consensus MFE | -16.01 |
Energy contribution | -18.43 |
Covariance contribution | 2.42 |
Combinations/Pair | 1.18 |
Mean z-score | -2.04 |
Structure conservation index | 0.46 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.509898 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11633966 112 - 27905053 ACAAAGGAGUCCGACCAGAACACUGGAGAAUGCUCCUCCAAGUAAUCCCAGUAACUUCCAGCCAUUUUAGUUGG---AAAAAAAUGGGGGGUGUUGUG--GGGCG---GAAGGUCGUUGU ((((.((..((((.(((.((((((((((.......))))......(((((.....(((((((.......)))))---)).....))))))))))).))--)..))---))...)).)))) ( -42.60) >DroSec_CAF1 15144 112 - 1 ACAAAGGAGCCCGACCAGAACACUGGAGAAUGCUCCUCCAAGUAAUCCCAGUAACUUCCAGCCAUUUUAGUUGG---AAAAAAAUGGGGGGUGUUGUG--GGGCG---GAAGGUCGUUGU ((((..((.((((.(((.((((((((((.......))))......(((((.....(((((((.......)))))---)).....))))))))))).))--)..))---)..).)).)))) ( -40.30) >DroSim_CAF1 12439 115 - 1 ACAAAGGAGCCCGACCAGAACACUGAAGAAUGCUCCUCCAAAUAAUCCCAGUAACUUCCAGCCAUUUUAGUUGGGAAAAAAAAAUGGGGGGUGUUGUG--GGGCG---GAAGGUCGUUGU ((((..((.((((.(((.((((((((.((....)).)).......(((((.....(((((((.......)))))))........))))))))))).))--)..))---)..).)).)))) ( -32.32) >DroEre_CAF1 12791 106 - 1 ACAAAGGAACCCGACCAGAACACUGGAGAAUACUCCUCCA-----GCCCAGUAACUUCCAGCCGUUUUAGUUGG---AA-AAAAUGGGGGGUGUUGUG--GGGCA---GAAGGUCGUUGU ...........(((((.......(((((.......)))))-----((((..((((.(((..(((((((......---..-))))))).))).))))..--)))).---...))))).... ( -36.60) >DroYak_CAF1 15247 111 - 1 ACAAAGGAACCCGACCAGAACACUGGAGAAUGCUCCUCCAAGUAAUCCCAGUGACUUCCAGCCAUUUUACUUGG---CC-CAAAUGGGGGGUGUUGUG--GGGCA---GAAGGUCGUUGU ...........(((((....((((((.((.((((......)))).)))))))).((.((..((((..(((((..---((-(....))))))))..)))--))).)---)..))))).... ( -36.90) >DroAna_CAF1 14406 96 - 1 ACAAAGGAAUCC--CGAAUCCGCUGGAGA----------------GCCCAGUAACUUUGAGGC---UCAAACGCG--AA-ACAAAGUGAAAAGCCGGGAGAGGAAAAUAAAGGUCGUUGU .........(((--((.....(((...((----------------((((((.....))).)))---))...(((.--..-.....)))...))))))))..................... ( -22.30) >consensus ACAAAGGAACCCGACCAGAACACUGGAGAAUGCUCCUCCAAGUAAUCCCAGUAACUUCCAGCCAUUUUAGUUGG___AA_AAAAUGGGGGGUGUUGUG__GGGCA___GAAGGUCGUUGU ...........(((((.......(((((.......)))))......(((.(((((.(((..(((((((............))))))).))).)))))...)))........))))).... (-16.01 = -18.43 + 2.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:09 2006