Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,666,205 – 1,666,321 |
Length | 116 |
Max. P | 0.659080 |
Location | 1,666,205 – 1,666,321 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 80.70 |
Mean single sequence MFE | -33.38 |
Consensus MFE | -19.75 |
Energy contribution | -22.81 |
Covariance contribution | 3.06 |
Combinations/Pair | 1.15 |
Mean z-score | -1.92 |
Structure conservation index | 0.59 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.659080 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1666205 116 + 27905053 CGACUUCUGGCCAGCGAUUCCCAUGUAUUUCAUAUCGCAUUGCCGGUUCCGGAUGGUGUUAACCAGAAAUCGACCAUGUCGAUAUAAGGCACUUAA-GUGCCUACACCGGAGACAUU ......(((((..(((((....(((.....))))))))...)))))((((((.((((....))))...((((((...))))))...((((((....-))))))...))))))..... ( -40.50) >DroSec_CAF1 5139 114 + 1 CGACUUCUGGCCAGCGAUUCCCAUACAUUUCAUAUCGCAUUGCCGGUUCCGGAUGGUGUUAACCAGAA--UAACCACGUCGAUAUAAGGCACUUAA-GUGCCUACACCGGAGACAUU ......(((((..(((((...............)))))...)))))((((((.((((....))))...--................((((((....-))))))...))))))..... ( -34.96) >DroSim_CAF1 5148 114 + 1 CGACUUCUGGCCAGUGAUUCCCAUACAUUUCAUAUCGCAUUGCCGGUUCCGGAUGGUGUUAACCAGAA--UAACCACGUCGAUAUAAGGCACUUAA-GUGCCUACACCGGAGACAUU ......(((((..(((((...............)))))...)))))((((((.((((....))))...--................((((((....-))))))...))))))..... ( -33.06) >DroEre_CAF1 5418 113 + 1 UGACUUCUGGCCUGCGAUUCCCAUGUAUUUC-CAUCGCAGUGCCGGUUCCGGAUGGUGUUAACCAGAA--UAGCCACGUCGAUAUAAGGCACUUAA-GUGCCUACACCGGAGACAUG ......((((((((((((.............-.))))))).)))))((((((.((((....))))...--................((((((....-))))))...))))))..... ( -40.34) >DroYak_CAF1 5167 100 + 1 UGA--------------UUUCCAUGUAUUUCAUAUUGCAGUGCCGGUUCCGGAUGGUGUUAGCCAGAA--UAACCACGUCGAUAUAAGGCACUUAA-GUGAAUACACCGGAGACAUU ((.--------------(((((.((((((.(((.(((.(((((((....).((((..((((.......--))))..)))).......)))))))))-)))))))))..))))))).. ( -27.40) >DroAna_CAF1 3891 110 + 1 CGAGCUUGUAAGGGGAAUUCCCAUGUACAUCAUAU-----GGCCAGUUCCGGAUGGCGUUAACCAGAA--CCCCCUGUCCAAUAAAAAACAUUUAAUGUGCGUACACCGGAGACAUU ......(((...(((....)))((((((((...((-----(((((........))))......(((..--....)))............)))...)))))))))))..(....)... ( -24.00) >consensus CGACUUCUGGCCAGCGAUUCCCAUGUAUUUCAUAUCGCAUUGCCGGUUCCGGAUGGUGUUAACCAGAA__UAACCACGUCGAUAUAAGGCACUUAA_GUGCCUACACCGGAGACAUU ......(((((..(((((...............)))))...)))))((((((.((((....)))).....................((((((.....))))))...))))))..... (-19.75 = -22.81 + 3.06)
Location | 1,666,205 – 1,666,321 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 80.70 |
Mean single sequence MFE | -34.35 |
Consensus MFE | -22.71 |
Energy contribution | -23.80 |
Covariance contribution | 1.09 |
Combinations/Pair | 1.20 |
Mean z-score | -1.58 |
Structure conservation index | 0.66 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.658431 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1666205 116 - 27905053 AAUGUCUCCGGUGUAGGCAC-UUAAGUGCCUUAUAUCGACAUGGUCGAUUUCUGGUUAACACCAUCCGGAACCGGCAAUGCGAUAUGAAAUACAUGGGAAUCGCUGGCCAGAAGUCG .(((((...(((((((((((-....))))).)))))))))))...(((((((((((((.......(((....)))....((((((((.....)))....)))))))))))))))))) ( -42.70) >DroSec_CAF1 5139 114 - 1 AAUGUCUCCGGUGUAGGCAC-UUAAGUGCCUUAUAUCGACGUGGUUA--UUCUGGUUAACACCAUCCGGAACCGGCAAUGCGAUAUGAAAUGUAUGGGAAUCGCUGGCCAGAAGUCG .........(((((((((((-....))))).))))))(((..(((..--.(((((..........))))))))(((...(((((...............)))))..)))....))). ( -36.16) >DroSim_CAF1 5148 114 - 1 AAUGUCUCCGGUGUAGGCAC-UUAAGUGCCUUAUAUCGACGUGGUUA--UUCUGGUUAACACCAUCCGGAACCGGCAAUGCGAUAUGAAAUGUAUGGGAAUCACUGGCCAGAAGUCG ....(((((((((..(((((-....)))))((((((((.(((.(((.--((((((..........))))))..))).))))))))))).............))))))..)))..... ( -34.60) >DroEre_CAF1 5418 113 - 1 CAUGUCUCCGGUGUAGGCAC-UUAAGUGCCUUAUAUCGACGUGGCUA--UUCUGGUUAACACCAUCCGGAACCGGCACUGCGAUG-GAAAUACAUGGGAAUCGCAGGCCAGAAGUCA ((((((...(((((((((((-....))))).))))))))))))....--(((((((.........(((....)))..(((((((.-.............)))))))))))))).... ( -42.24) >DroYak_CAF1 5167 100 - 1 AAUGUCUCCGGUGUAUUCAC-UUAAGUGCCUUAUAUCGACGUGGUUA--UUCUGGCUAACACCAUCCGGAACCGGCACUGCAAUAUGAAAUACAUGGAAA--------------UCA ......((((.((((((((.-...((((((..((......))(((..--.(((((..........))))))))))))))......)).))))))))))..--------------... ( -22.50) >DroAna_CAF1 3891 110 - 1 AAUGUCUCCGGUGUACGCACAUUAAAUGUUUUUUAUUGGACAGGGGG--UUCUGGUUAACGCCAUCCGGAACUGGCC-----AUAUGAUGUACAUGGGAAUUCCCCUUACAAGCUCG ......(((.(((((((((.......(((((......)))))((.((--((((((..........))))))))..))-----...)).))))))).))).................. ( -27.90) >consensus AAUGUCUCCGGUGUAGGCAC_UUAAGUGCCUUAUAUCGACGUGGUUA__UUCUGGUUAACACCAUCCGGAACCGGCAAUGCGAUAUGAAAUACAUGGGAAUCGCUGGCCAGAAGUCG ......(((.((((((((((.....)))))((((((((.....(((...((((((..........))))))..)))....))))))))..))))).))).................. (-22.71 = -23.80 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:16 2006