Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 302,675 – 302,795 |
Length | 120 |
Max. P | 0.905634 |
Location | 302,675 – 302,795 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 73.40 |
Mean single sequence MFE | -37.84 |
Consensus MFE | -13.96 |
Energy contribution | -16.32 |
Covariance contribution | 2.36 |
Combinations/Pair | 1.04 |
Mean z-score | -2.01 |
Structure conservation index | 0.37 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.905634 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 302675 120 + 27905053 CUCUGACGAUGCUGUCACUGUCCAUCGAAUGAUUAUGCCCACGAUGUGUUAACCCCGAAUGGUACGAAGAUCGUGGCCAAGCAUCUCAGUCUCAGACGAGAGUCUCAGGGGCCAGAGAAC (((((..((((((((((...((....)).))))..((.(((((((.(....(((......)))....).))))))).))))))))...(((((((((....))))..))))))))))... ( -40.60) >DroSec_CAF1 37943 95 + 1 CUCUGACGAUGCUGUCACUGUCCAUCGCA---------------UGUGGAAACCCCGAAUGGUGCUGGGAUCGUGGCCAAGCAUCUCAGUCUCAGACGAG----------ACCAGAGAAC (((((..(((((((((((.((((...(((---------------(.(((.....)))....))))..)))).)))))..))))))...(((((....)))----------)))))))... ( -38.90) >DroSim_CAF1 39663 95 + 1 CUCUGACGAUGCUGUCACUGUCCAUCGCA---------------UGUGGAAACCCCGAAUGGUGCUGGGAUCGUGGCCAAGCAUCUCAGUCUCAGACGAG----------GCCAGAGAAC (((((..(((((((((((.((((...(((---------------(.(((.....)))....))))..)))).)))))..))))))...(((((....)))----------)))))))... ( -38.30) >DroEre_CAF1 42146 114 + 1 CUCUGAUGAUGCUGUCACUGUCCAUCGAAUGCUUGUGCCCAUGAUGUGAAAACAUCGAAUGGUACGGAGAUCGUGUCCAACCUUCACA------GACGAGAGUCUCAGGGGUCUGAGAAC (((.((((((((.(((.(((((((((....((....))....(((((....)))))).)))).)))).))).)))))...((((...(------(((....)))).))))))).)))... ( -37.30) >DroYak_CAF1 42149 114 + 1 CUGUGAUGAUGCUGUCACUGUCCAUCUAAUGCUUGUGUCCACAAUAUGGAAACAUCAAAUGGUACGGAGAUCGUGUCCCAGCAUCAGA------GACGAGAGUCUCAGGGGCCUGAGAAC ..(((((......)))))((((..(((.(((((.(((.(((....(((....)))....))))))((.(((...)))))))))).)))------))))....((((((....)))))).. ( -34.10) >consensus CUCUGACGAUGCUGUCACUGUCCAUCGAAUG_UU_UG_CCA__AUGUGGAAACCCCGAAUGGUACGGAGAUCGUGGCCAAGCAUCUCAGUCUCAGACGAGAGUCUCAGGGGCCAGAGAAC (((((..(((((((((((.(((.........................(....).((....))......))).)))))..)))))).........(((....)))........)))))... (-13.96 = -16.32 + 2.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:11 2006