Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,630,853 – 11,630,953 |
Length | 100 |
Max. P | 0.623939 |
Location | 11,630,853 – 11,630,953 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 81.11 |
Mean single sequence MFE | -14.10 |
Consensus MFE | -10.08 |
Energy contribution | -9.84 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.07 |
Mean z-score | -1.61 |
Structure conservation index | 0.71 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.623939 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11630853 100 + 27905053 UCAAUUUAAAUUGAUUUUUUCAUUGUUG--CGGCGUCCGUUUCACUUUUUCUCGCCCAACGGCCGCUUGCCAUCCUGCUCUUUCUAUCCCCAUCCC------CUUCCC (((((....)))))..........((((--.((((.................))))))))(((.....))).........................------...... ( -15.13) >DroSec_CAF1 12060 90 + 1 UCAAUUUAAAUUGAUUUUUUCAUUGUUGCGCGGCGUCCGUUUCACUUUUUCUCGCCCAACGGCCGCUUGCCAUCCUGCUCUUACUCUC------------------CC (((((....)))))............((.((((((.(((((...(........)...))))).))).)))))................------------------.. ( -13.60) >DroSim_CAF1 9366 90 + 1 UCAAUUUAAAUUGAUUUUUUCAUUGUUGCGCGGCGUCCGUUUCACUUUUUCUCGCCCAACGGCCGCUUGCCAUCCUGCUCUUACUCUC------------------CC (((((....)))))............((.((((((.(((((...(........)...))))).))).)))))................------------------.. ( -13.60) >DroEre_CAF1 9593 105 + 1 UCAAUUUAAAUUGAUUUUUUCAUUGUUG--CGGUGUCCGUUUCACUU-UUCUCGCUCAACGGGCGCUUACUACUCUACUCUUUUUAUCCCCAUUCCCAUCGCCAUCCC (((((....)))))..........((..--.((((((((((......-.........)))))))))).))...................................... ( -13.26) >DroYak_CAF1 12187 105 + 1 UCAAUUUAAAUUGAUUUUUUCAUUGUUG--CGGUGUCCGUUUCACUU-UUCUCGCGCAACGGGCGCUUACUAUUCUACUCUUUUUAUCCCCAUUCCCAUCCUCAUCCC (((((....)))))..........((..--.((((((((((.(.(..-.....).).)))))))))).))...................................... ( -14.90) >consensus UCAAUUUAAAUUGAUUUUUUCAUUGUUG__CGGCGUCCGUUUCACUUUUUCUCGCCCAACGGCCGCUUGCCAUCCUGCUCUUUCUAUCCCCAU_CC______C_UCCC (((((....))))).................((((.(((((...(........)...))))).))))......................................... (-10.08 = -9.84 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:08 2006