Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,630,502 – 11,630,601 |
Length | 99 |
Max. P | 0.985537 |
Location | 11,630,502 – 11,630,601 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 92.78 |
Mean single sequence MFE | -32.60 |
Consensus MFE | -25.26 |
Energy contribution | -25.54 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.10 |
Mean z-score | -3.01 |
Structure conservation index | 0.77 |
SVM decision value | 2.01 |
SVM RNA-class probability | 0.985537 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11630502 99 - 27905053 GACAGCAAGUUUGUAGCACUUUGUCUGCUCCGAUUCCUGCGCUGGUUUUAUUUAUAAC-CAAUCGCAUUGCGAAUCGAGUGCAGAAUCGGUCUAGACGGA ....((.........))..((((((((..(((((((.((((((((((........)))-)..((((...))))....)))))))))))))..)))))))) ( -34.80) >DroSec_CAF1 11715 100 - 1 GCUUGCUAGUUUGUAGCACUUUGUCUGCUCCGAUUCCUGCGCUGGUUUUAUUUAUAACCCAAUCGCAUUGCGAAUCGAGUGCAGAAUCGGUCUAGACGGA ...(((((.....))))).((((((((..(((((((.((((((((((........))))...((((...))))....)))))))))))))..)))))))) ( -37.20) >DroSim_CAF1 9020 100 - 1 GCCUGCUAGUUUGUAGCACUUUGUCUGCUCCGAUUCCUGCGCUGGUUUUAUUUAUAACCCAAUCGCAUUGCGAAUCGAGUGCAGAAUCGGUCUAGACGGA .(((((((.....)))))....(((((..(((((((.((((((((((........))))...((((...))))....)))))))))))))..))))))). ( -37.50) >DroEre_CAF1 9212 99 - 1 GUUUGCAAUUUUGUAACACUUUGUCUGCUCCGAUUCGCAUGCUGGUUUUAUUUAUAAC-CAAUCCCAUUGCGAAUCGAGUGCAGAAUCGGUCUAGACGGA .........(((((...(((...(((((.((((((((((((.(((((........)))-))....)).))))))))).).)))))...)))....))))) ( -30.10) >DroYak_CAF1 11792 99 - 1 GUUUGCAAUUUUGUAACACUUUGUCUGCUCCGAUUCCUAUGCUGCUUUUAUUUAUAAC-CAAUCCCAUUGCGAAUCGAGUGCAGAAUCGGUCUAGACGGA (((((((....))))).))((((((((..(((((((...(((.((((..(((..(((.-........)))..))).))))))))))))))..)))))))) ( -23.40) >consensus GCUUGCAAGUUUGUAGCACUUUGUCUGCUCCGAUUCCUGCGCUGGUUUUAUUUAUAAC_CAAUCGCAUUGCGAAUCGAGUGCAGAAUCGGUCUAGACGGA (.((((......)))))..((((((((..(((((((.(((((((((((.......................))))).)))))))))))))..)))))))) (-25.26 = -25.54 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:07 2006