Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,630,295 – 11,630,403 |
Length | 108 |
Max. P | 0.613309 |
Location | 11,630,295 – 11,630,403 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 88.13 |
Mean single sequence MFE | -30.10 |
Consensus MFE | -22.44 |
Energy contribution | -23.72 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.16 |
Mean z-score | -1.66 |
Structure conservation index | 0.75 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.613309 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11630295 108 - 27905053 AAACAGACGCUAUUUGGAGGGUGGUUUCUAUAU------UGAUUGCGGCAAGUGCCGCGAAUCAGCGCUUUCGAUUUCUCACCUUUCGUGGAACUCGGCUUUUGUUUAUAACUU (((((((.(((.....(((((((.........(------((((((((((....))))).)))))))))))))((.(((.(((.....)))))).))))).)))))))....... ( -33.60) >DroSec_CAF1 11506 106 - 1 AAACAGACGCUUUUUGGAGGGUGGUUUCUAUAU------UGAUUGCGGCCAGUGCCGCAACUCAGCGCUUUCGAUUUCUCACCUUUU--GGAACUCGGCUUUUGUUUAUAACUU (((((((.((((((..((((((((........(------((((((((((....))))))).))))((....)).....)))))))).--.)))...))).)))))))....... ( -34.20) >DroSim_CAF1 8798 108 - 1 AAACAGACGCUUUUUGGAGGGUGGUUUCUAUAU------UGAUUGCGGCCAGUGCCGCAACUCAGCGCUUUCGAUUUCUCACCUUUUGUGGAACUCGGCUUAUGUUUAUAACUU (((((...(((.....(((((((.........(------((((((((((....))))))).)))))))))))((.(((.(((.....)))))).)))))...)))))....... ( -29.50) >DroEre_CAF1 8999 114 - 1 AAACAGACGCUUCUUGGAGGGUGGUUUAUAUAUAUAUAAUCAAUAUAGCAAGUGCCGCAAAUCGCCGCUUUCGAUUUCUUACCUUUUGUGGAACGCGGCUUUUGUUUAUAACUU (((((((.........((..(((((.......(((((.....)))))......)))))...))(((((.(((.((............)).))).))))).)))))))....... ( -26.32) >DroYak_CAF1 11580 108 - 1 AAACAGACGCUUUUUGGAGGGUGGUUUCUACAU------UGAUUGGAGCUAGUGCCGCAAGUCACCGCUUUCGAUUUCUCACCUUUUGUGGCACUCAGCAUUUGUUUAUAACUU (((((((((((((....))))))..........------........((((((((((((((.......................))))))))))).))).)))))))....... ( -26.90) >consensus AAACAGACGCUUUUUGGAGGGUGGUUUCUAUAU______UGAUUGCGGCAAGUGCCGCAAAUCAGCGCUUUCGAUUUCUCACCUUUUGUGGAACUCGGCUUUUGUUUAUAACUU (((((((.(((.....(((((((((....))........((((((((((....))))))).))).)))))))((.(((.(((.....)))))).))))).)))))))....... (-22.44 = -23.72 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:06 2006