Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,623,838 – 11,623,949 |
Length | 111 |
Max. P | 0.529293 |
Location | 11,623,838 – 11,623,949 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.13 |
Mean single sequence MFE | -48.00 |
Consensus MFE | -28.70 |
Energy contribution | -28.57 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.52 |
Mean z-score | -1.40 |
Structure conservation index | 0.60 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.529293 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11623838 111 + 27905053 UUGCCCGCCAGCCGGACUGGCAGUACCGCGUCAUGCGCAGCCAGCCCAAGGCCAUUGUCAAGGCCAUGUGGAAGGCGGAGCGCGAGACGAUAGCCUCA---GGCG---GUGU---CGGCG ..(((.(((((.....))))).((((((((((.(((((.(((..((((.((((........)))).)).))..)))...))))).)))((.....)).---.)))---))).---)))). ( -52.90) >DroVir_CAF1 6886 114 + 1 UUGCCCGUCAGCCGGAUUGGCAAUAUCGCGUUAUGCGCAGCCAGGCCAAGGCAAUUGUUAAGAGCGUCUGGAAGGCUGAGCGCGAGGCAGUUGCACUA---AGUGGCGGCGG---CGGCG ..(((.(((.(((...(((((......(((.....))).)))))(((((((((((((((....((((..((....))..))))..))))))))).)).---..)))))))))---)))). ( -45.50) >DroGri_CAF1 2702 111 + 1 UUAGCCGUCAGCCGGAUUGGCAAUAUCGGGUGAUGCGCAGCCAGGCCAAGGCGAUUGUGAGGGGCGUGUGGAAGGCGGAACGCGAAGCGAUCGCUUCG---AAUG---GCGG---CGGCG ...((((((.(((((.(((((..((((....))))....))))).)).((((((((((......(((((..........)))))..))))))))))..---...)---))))---)))). ( -45.00) >DroWil_CAF1 10083 114 + 1 UCGCCCGACAGCCGGAUUGGCAAUAUCGUGUCAUGCGUUGCCAACCAAAGGCCAUUGUUAAGAGCAUGUGGAAGGCAGAACGCGAGAUGUUGGCCAGAAUUGGAG---GUGG---UGGCA ..((((.((..((((.(((((((((((......(((((((((..(((...(((........).))...)))..))))..))))).)))))).)))))..))))..---)).)---.))). ( -41.20) >DroMoj_CAF1 6922 111 + 1 UUAGCCGUCAGCCUGAUUGGCAAUAUCGUGUAAUGCGUAGCCAGGCCAAGGCGAUUGUCAAGAGCGUCUGGAAGGCUGAGCGCGAGGCGAUUGCCUCU---GCUG---GCGG---UGGCA ...(((((((((..((..((((..(((((.(..(((.(((((...(((.((((.((.....)).)))))))..))))).)))..).))))))))))).---))))---))))---).... ( -48.20) >DroAna_CAF1 4995 114 + 1 UUGCCCGCCAGCCGGACUGGCAGUACCGAGUGAUGCGGAGCCAGGCCAAGGCCAUUGCCAAGAGCGUGUGGAAGGCGGAGCGCGAGGCGCUGGCCUCC---GGCG---GCGGCACUGGCG .((((.(((.(((((((((((....((((....).))).))))).....(((((.((((....((((.(.(....).).))))..)))).))))))))---))))---))))))...... ( -55.20) >consensus UUGCCCGUCAGCCGGAUUGGCAAUAUCGCGUCAUGCGCAGCCAGGCCAAGGCCAUUGUCAAGAGCGUGUGGAAGGCGGAGCGCGAGGCGAUGGCCUCA___GGUG___GCGG___CGGCG ..........(((((.(((((.....(((.....)))..))))).))..((((((((((....((((............))))..)))))))))).....................))). (-28.70 = -28.57 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:04 2006