Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,620,733 – 11,620,850 |
Length | 117 |
Max. P | 0.985013 |
Location | 11,620,733 – 11,620,850 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 73.86 |
Mean single sequence MFE | -54.83 |
Consensus MFE | -38.00 |
Energy contribution | -40.25 |
Covariance contribution | 2.25 |
Combinations/Pair | 1.25 |
Mean z-score | -2.01 |
Structure conservation index | 0.69 |
SVM decision value | 1.99 |
SVM RNA-class probability | 0.985013 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11620733 117 - 27905053 CUGCUGUUGUAGAUGCGGGGAAGCGGUAACUGAGGCCGCUGCCGCU---GAUGAGCGGGUAAUCCGCGUGGUGGCCGUGGCCGGCGUGGGUGUUGCCGGCUUCUUGACCAAGCCAACUGC ((((....))))..((((......((((((...((((((.((((((---(....((((.....)))).))))))).)))))).((....))))))))(((((.......)))))..)))) ( -51.40) >DroPse_CAF1 5824 107 - 1 CAGCUUUGGCAGCUGCC-----GCUGCUGCUGAGGCGGCCGCCUCCUUGGAGGAGCGCGUCACACGCGUUGUGGCCGUUGCCGGCGUUGGUGUCGCUGGUUUCUUCACAA--CC------ ..((((..(((((....-----...)))))..))))(((((((((....))).((((((.....))))))))))))(..(((((((.......)))))))..).......--..------ ( -54.20) >DroEre_CAF1 13115 117 - 1 CUGUUGUUGUAGUUGCGGGGAAGCGGUCACUGAGGCCGCUGCCGCC---GAAGAGCGGGUAACCCGCGUGGUGGCUGUGGCCGGCGUGGGCGUUGCCGGCUUCUUGACCAAGCCAACUGC ........((((((....((.((((.((((...((((((.((((((---(....(((((...))))).))))))).))))))...)))).)))).))(((((.......))))))))))) ( -59.50) >DroPer_CAF1 5826 107 - 1 CAGCUUUGGCAGCUGCC-----GCUGCUGCUGAGGCGGCCGCCUCCUUGGAGGAACGCGUCACACGCGUUGUGGCCGUUGCCGGCGUUGGUGUCGCUGGUUUCUUCACCA--CC------ ..((((..(((((....-----...)))))..))))(((((((((....))).((((((.....))))))))))))(..(((((((.......)))))))..).......--..------ ( -54.20) >consensus CAGCUGUGGCAGCUGCC_____GCGGCUACUGAGGCCGCCGCCGCC___GAGGAGCGCGUAACACGCGUGGUGGCCGUGGCCGGCGUGGGUGUCGCCGGCUUCUUCACCA__CC______ ..((((((((((((((......))))))))))))))(((((((((.........(((((...))))))))))))))(..(((((((.......)))))))..)................. (-38.00 = -40.25 + 2.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:03 2006