Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,598,632 – 11,598,744 |
Length | 112 |
Max. P | 0.663643 |
Location | 11,598,632 – 11,598,744 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 88.74 |
Mean single sequence MFE | -22.36 |
Consensus MFE | -18.44 |
Energy contribution | -18.44 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.48 |
Structure conservation index | 0.82 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.663643 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11598632 112 - 27905053 CAUCAUUUGCACCUCCUUCAUUAUGGGCUUGGCUCGUUAUUUGUCAAACAAAUAAACAGCAGGCAAUGCCAAUGCCGGUGCACUUAGAAAAAUUAGAAUUUAAUUUUUUGCU .......(((((((((........)))....(((..(((((((.....)))))))..))).((((.......))))))))))....((((((((((...))))))))))... ( -27.50) >DroSec_CAF1 128314 112 - 1 CAUCAUUUGCACCUCCUUCAUUAUGGGCUUGGCUCGUUAUUUGUCAAACAAAUAAACAGCAGGCAAUGCCAAUGCCGGUACACUUAGAAAAACUAGAAUUUAUUCUUUUGCU ........(((..........(((.(((...(((..(((((((.....)))))))..))).(((...)))...))).)))...((((.....))))............))). ( -20.50) >DroSim_CAF1 132833 112 - 1 CAUCAUUUGCACCUCCUUCAUUAUGGGCUUGGCUCGUUAUUUGUCAAACAAAUAAACAGCAGGCAAUGCCAAUGCCGGUGCACUUAGAAAAACUACAAUUAUUUCUUUUGCU .......(((((((((........)))....(((..(((((((.....)))))))..))).((((.......)))))))))).............................. ( -24.40) >DroEre_CAF1 130418 98 - 1 CAUCAUUUGCACCUCCUUCAUUAUGGGCUUGGCUCGUUAUUUGUCAAACAAAUAAACAGCAGGCAAUGCCAAUGCCGCCACACUUAGAAAAACAAAAA-------------- ................(((....(((((...(((..(((((((.....)))))))..))).((((.......))))))).))....))).........-------------- ( -19.20) >DroYak_CAF1 129650 111 - 1 CAUCAUUUGCACCUCCUUCAUUAUGGGCUUGGCUCGUUAUUUGUCAAACAAAUAAACAGCAGGCAAUGCCAAUGUCGGCACACUUAGAGAAACUCAACUUCAUACUUUUCC- .....................((((((((((.((..(((((((.....)))))))..)))))))..((((......))))......(((...)))....))))).......- ( -20.20) >consensus CAUCAUUUGCACCUCCUUCAUUAUGGGCUUGGCUCGUUAUUUGUCAAACAAAUAAACAGCAGGCAAUGCCAAUGCCGGUACACUUAGAAAAACUAAAAUUUAUUCUUUUGCU ...((((.(((...((........))(((((.((..(((((((.....)))))))..)))))))..))).))))...................................... (-18.44 = -18.44 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:50 2006