Locus 4385

Sequence ID 3R_DroMel_CAF1
Location 11,597,602 – 11,597,710
Length 108
Max. P 0.994114
window7165

overview

Window 5

Location 11,597,602 – 11,597,710
Length 108
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 95.49
Mean single sequence MFE -30.62
Consensus MFE -26.76
Energy contribution -26.80
Covariance contribution 0.04
Combinations/Pair 1.10
Mean z-score -2.12
Structure conservation index 0.87
SVM decision value 2.45
SVM RNA-class probability 0.994114
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11597602 108 + 27905053
AGCGAAAGUGGUGCUCUUUGAUAUUUCAGCUGGUGCAGUCAAGGCUGAAAAUCGAUCCCAAAUCGCAGAUGGAACAAAUCCACUGAAU-UGCCCGCAAUACUUUCAACU
...(((((((.(((...(((((.((((((((..((....)).)))))))))))))..........(((.((((.....)))))))...-.....))).))))))).... ( -31.20)
>DroSec_CAF1 127327 109 + 1
AGCGAAAGUGGUGCUCUUUGAUAUUUUGGCUGGUGCAGUCAAGGCUGAAAAUCGAUCCCAAAUCGCAGAUGGAACAAAUCCACUGAAUUUGCCCGCAAUACUUUCAACU
...(((((((.(((...(((((.(((..(((..((....)).)))..))))))))...(((((..(((.((((.....))))))).)))))...))).))))))).... ( -30.10)
>DroSim_CAF1 131826 109 + 1
AGCGAAAGUGGUGCUCUUUGAUAUUUCGGCUGGUGCAGUCAAGGCUGAAAAUCGAUCCCAAAUCGCAGAUGGAACAAAUCCACUGAAUUUGCCCGCAAUACUUUCAACU
...(((((((.(((...(((((.((((((((..((....)).)))))))))))))...(((((..(((.((((.....))))))).)))))...))).))))))).... ( -32.50)
>DroEre_CAF1 129358 108 + 1
AGCGAAAGUGGUGCUCUUUGAUAUUUCAGCUUGUGCAGUCAAGGCUGAAAAUCGAUCACAAAUCGCAGAUGGAACAAAUCCACCGAAU-UGCCCGCAAUACUUUCAACU
...(((((((.(((...(((((.(((((((((.........))))))))))))))...(((.(((....((((.....)))).))).)-))...))).))))))).... ( -30.80)
>DroYak_CAF1 128525 107 + 1
AGCGAAAGUGGUGCUCUUUGCUUUUUCAGUUUGUGCAGUCAAGGCUGAAAAUCGAUCUCAAAUCGCAGAUGG-ACAAAUCCACUGAAU-UGCCCGCAAUACUUUCAACU
...(((((((.(((..(((((.((((((((((.........))))))))))..(((.....)))))))).((-.(((.((....)).)-)).))))).))))))).... ( -28.50)
>consensus
AGCGAAAGUGGUGCUCUUUGAUAUUUCAGCUGGUGCAGUCAAGGCUGAAAAUCGAUCCCAAAUCGCAGAUGGAACAAAUCCACUGAAU_UGCCCGCAAUACUUUCAACU
...(((((((.(((...(((((.((((((((...........)))))))))))))..........(((.((((.....))))))).........))).))))))).... (-26.76 = -26.80 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:49 2006