Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,593,341 – 11,593,450 |
Length | 109 |
Max. P | 0.990644 |
Location | 11,593,341 – 11,593,450 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 93.85 |
Mean single sequence MFE | -34.42 |
Consensus MFE | -27.94 |
Energy contribution | -31.00 |
Covariance contribution | 3.06 |
Combinations/Pair | 1.03 |
Mean z-score | -2.58 |
Structure conservation index | 0.81 |
SVM decision value | 2.22 |
SVM RNA-class probability | 0.990644 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11593341 109 + 27905053 UUUAAUAUGCAAAAUUGUGGAAGCCGUCCAAAUUGAGCAAUCAAAAGUUCUGGGAAAUUAACUCCCAAAGCUGGGAGCUUCCACACUUUGGAACGCCUGCUUUUGGGCG .......(.((((..(((((((((..(((...((((....)))).((((.(((((.......))))).)))).)))))))))))).)))).).(((((......))))) ( -39.50) >DroSec_CAF1 123192 109 + 1 UUUAAUAUGCAAAAUCGUGGAAGCCGUCCAAAUUGAGCAAUCAAAAGUUCUGGGAAAUUAACUCCCAAAGCUGGGCGCUUGCACACUUUGGAGCGCCUGCUUUUGGGCG .......(.((((...(((.((((.((((...((((....)))).((((.(((((.......))))).)))))))))))).)))..)))).).(((((......))))) ( -36.60) >DroSim_CAF1 126623 109 + 1 UUUAAUAUGCAAAAUCGUGGAAGCCGUCCAAAUUGAGCAAUCAAAAGUUCUGGGAAAUUAACUCCCAAAGCUGGGAGCUUGCACACUUUGGACCGCCUGCUUUUGGGCG ........((..((..(..(..((.(((((((.((.((((((...((((.(((((.......))))).))))..))..)))).)).))))))).)))..)..))..)). ( -34.80) >DroEre_CAF1 125457 109 + 1 UUUAAUAUGCAAAAUCUACGAAGCCGCCCAAAUUGAGCAAUCAAAAGUUCUGGGAAAUGAACUCCCAAAGCUGGGAGCUACCACACUUUGGACCGCCUGCUUUUGGGCC .........................((((((...(((((......(((((........))))).((((((.(((......)))..))))))......))))))))))). ( -28.60) >DroYak_CAF1 124558 109 + 1 UUUAAUAUGCAAAAUCUCUGAAGCCGCCCAAAUUGAGCAAUCAAAAGUUCUGGGAAAUUAACUCCCAAAGCUGGGAGCUUCCACACUUUGGACUGCCUGCUUUGGGGCG ...............(((..((((..(((...((((....)))).((((.(((((.......))))).))))))).((.((((.....))))..))..))))..))).. ( -32.60) >consensus UUUAAUAUGCAAAAUCGUGGAAGCCGUCCAAAUUGAGCAAUCAAAAGUUCUGGGAAAUUAACUCCCAAAGCUGGGAGCUUCCACACUUUGGACCGCCUGCUUUUGGGCG .........((((...((((((((..(((...((((....)))).((((.(((((.......))))).))))))).))))))))..))))....((((......)))). (-27.94 = -31.00 + 3.06)
Location | 11,593,341 – 11,593,450 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 93.85 |
Mean single sequence MFE | -35.26 |
Consensus MFE | -26.72 |
Energy contribution | -27.36 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.03 |
Mean z-score | -2.66 |
Structure conservation index | 0.76 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.919294 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11593341 109 - 27905053 CGCCCAAAAGCAGGCGUUCCAAAGUGUGGAAGCUCCCAGCUUUGGGAGUUAAUUUCCCAGAACUUUUGAUUGCUCAAUUUGGACGGCUUCCACAAUUUUGCAUAUUAAA ((((........))))...(((((((((((((((.((((.((((((((.....))))))))....((((....)))).))))..))))))))).))))))......... ( -37.00) >DroSec_CAF1 123192 109 - 1 CGCCCAAAAGCAGGCGCUCCAAAGUGUGCAAGCGCCCAGCUUUGGGAGUUAAUUUCCCAGAACUUUUGAUUGCUCAAUUUGGACGGCUUCCACGAUUUUGCAUAUUAAA ....((((((..((((((.((.....))..))))))....((((((((.....)))))))).))))))..(((..((((((((.....)))).))))..)))....... ( -30.60) >DroSim_CAF1 126623 109 - 1 CGCCCAAAAGCAGGCGGUCCAAAGUGUGCAAGCUCCCAGCUUUGGGAGUUAAUUUCCCAGAACUUUUGAUUGCUCAAUUUGGACGGCUUCCACGAUUUUGCAUAUUAAA .((......))((((.(((((((.((.((((......((.((((((((.....)))))))).)).....)))).)).))))))).)))).................... ( -34.00) >DroEre_CAF1 125457 109 - 1 GGCCCAAAAGCAGGCGGUCCAAAGUGUGGUAGCUCCCAGCUUUGGGAGUUCAUUUCCCAGAACUUUUGAUUGCUCAAUUUGGGCGGCUUCGUAGAUUUUGCAUAUUAAA .(((((((....(((((((.(((((.(((.(((((((......)))))))......)))..))))).)))))))...))))))).((............))........ ( -36.40) >DroYak_CAF1 124558 109 - 1 CGCCCCAAAGCAGGCAGUCCAAAGUGUGGAAGCUCCCAGCUUUGGGAGUUAAUUUCCCAGAACUUUUGAUUGCUCAAUUUGGGCGGCUUCAGAGAUUUUGCAUAUUAAA (((((.(((...(((((((.(((((..((((((((((......))))))....))))....))))).)))))))...))))))))((............))........ ( -38.30) >consensus CGCCCAAAAGCAGGCGGUCCAAAGUGUGGAAGCUCCCAGCUUUGGGAGUUAAUUUCCCAGAACUUUUGAUUGCUCAAUUUGGACGGCUUCCACGAUUUUGCAUAUUAAA ((.(((((....(((((((.(((((......((.....))((((((((.....))))))))))))).)))))))...))))).))((............))........ (-26.72 = -27.36 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:48 2006