Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,585,611 – 11,585,719 |
Length | 108 |
Max. P | 0.678221 |
Location | 11,585,611 – 11,585,719 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 88.92 |
Mean single sequence MFE | -22.33 |
Consensus MFE | -18.47 |
Energy contribution | -18.27 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.10 |
Mean z-score | -1.97 |
Structure conservation index | 0.83 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.678221 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11585611 108 + 27905053 UUAGAGUCUAUAAUCUUCAAAUAAUGGAAAAACUUUUGCUGUUAAGCAAGAGGAAUGCCAAAGCUUAGAUUUGUCUUUUAUUUUGGGUUCUU----------CAUUUUUUCUUUUGUU ...................(((((.(((((((...(((((....)))))(((((((.((((((...(((....)))....))))))))))))----------)..))))))).))))) ( -24.10) >DroPse_CAF1 127338 102 + 1 UUAGAGUCUAUAAUCUUCAAAUAAUGGAAAAACUUUUGCUGUUAAGCAAAAGGAAUGCCAGAGCUUAGAUUUGUCUUUUAUUUU----UCUA----------CCG--UUUCUUUUUUU .(((((...((((....(((((..(((.....((((((((....)))))))).....)))........)))))....))))..)----))))----------...--........... ( -19.60) >DroSec_CAF1 115599 106 + 1 UUAGAGUCUAUAAUCUUCAAAUAAUGGAAAAACUUUUGCUGUUAAGCAAGAGGAAUGCCAAAGCUUAGAUUUGUCUGUUAUUUUGGGUUCUU----------C-UUUUUUC-UUUGUU ...................(((((.(((((((...(((((....)))))(((((((.((((((..((((....))))...))))))))))))----------)-)))))))-.))))) ( -23.80) >DroYak_CAF1 116646 117 + 1 UUAGAGUCUAUAAUCUUCAAAUAAUGGAAAAACUUUUGCUGUUAAGCAAGAGGAAUGCCAAAGCUUAGAUUUGUCUCUUAUUUUGGGUUCUUCUUUUUUUUUCAUUUUUCC-UUUGUU ...................(((((.(((((((...(((((....)))))(((((((.((((((...(((......)))..)))))))))))))...........)))))))-.))))) ( -25.80) >DroAna_CAF1 201663 107 + 1 UUAGAGUCUAUAAUCUUCAAAUAAUGGAAAAACUUUUGCUGUUAAGCAAAAGGAAUGCCAAAGCUUAGAUUUGUCUUUUAUUUGCUGUUCUU----------CAUUUUUUC-UUUGUU ...................(((((.(((((((((((((((....))))))))((((..((((....(((....)))....))))..))))..----------..)))))))-.))))) ( -21.10) >DroPer_CAF1 128623 102 + 1 UUAGAGUCUAUAAUCUUCAAAUAAUGGAAAAACUUUUGCUGUUAAGCAAAAGGAAUGCCAGAGCUUAGAUUUGUCUUUUAUUUU----UCUA----------CCG--UUUCUUUUUUU .(((((...((((....(((((..(((.....((((((((....)))))))).....)))........)))))....))))..)----))))----------...--........... ( -19.60) >consensus UUAGAGUCUAUAAUCUUCAAAUAAUGGAAAAACUUUUGCUGUUAAGCAAAAGGAAUGCCAAAGCUUAGAUUUGUCUUUUAUUUUGGGUUCUU__________CAUUUUUUC_UUUGUU ..((((.(...(((((........(((.....((((((((....)))))))).....)))......))))).).))))........................................ (-18.47 = -18.27 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:46 2006