Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,578,065 – 11,578,190 |
Length | 125 |
Max. P | 0.999129 |
Location | 11,578,065 – 11,578,162 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 85.16 |
Mean single sequence MFE | -28.40 |
Consensus MFE | -24.80 |
Energy contribution | -25.20 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -3.08 |
Structure conservation index | 0.87 |
SVM decision value | 3.39 |
SVM RNA-class probability | 0.999129 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11578065 97 + 27905053 AGUUUUCCCAUUUUUU--U-GUUUUUGUUAUUUUACUUGGCAAACGUGGCGCAUUUUUAAAUGGUCACGUUUGGCAGUUUAAGCGCCUCGGUGGGGCAAC .(((.((((((.....--.-...(((((((.......)))))))((.(((((....((((((.((((....)))).))))))))))).)))))))).))) ( -29.80) >DroSec_CAF1 107041 94 + 1 AGUUUUCCCAUAUUU------UUUUUGUUAUUUUACUUGGCAAACGUGGCGCAUUUUUAAAUGGUCACGUUUGGCAGUUUAAGCGCCUCGGUGGGGCAAC .(((.((((((....------..(((((((.......)))))))((.(((((....((((((.((((....)))).))))))))))).)))))))).))) ( -30.40) >DroSim_CAF1 111008 98 + 1 AGUUUUCCCAUUUUUU--UUUUUUUUGUUAUUUUACUUGGCAAACGUGGCGCAUUUUUAAAUGGUCACGUUUGGCAGUUUAAGCGCCUCGGUGGGGCAAC .(((.((((((.....--.....(((((((.......)))))))((.(((((....((((((.((((....)))).))))))))))).)))))))).))) ( -29.80) >DroYak_CAF1 108119 100 + 1 AGUUUUUCGUUUCGUUUCUUUUUUUUGUUAUUUUGCUUGGCAAACGUGGCGCAUUUUUAAAUGGUCACGUUUGGCAGUUUAAGCGCCUCGGUGGGGCAAC ..................................(((((.((((((((((.((((....)))))))))))))).)).....)))((((.....))))... ( -28.40) >DroAna_CAF1 194233 86 + 1 UGUUUCUCCGUUUUUU--U------------UUUCUUUGCCAAACGUGGCGCAUUUUUAAAUGGUCACGUUUCGCAGUUUAAGCGCCACGCCAAGGCAAC ................--.------------.....(((((...((((((((....((((((.((........)).))))))))))))))....))))). ( -23.60) >consensus AGUUUUCCCAUUUUUU__U__UUUUUGUUAUUUUACUUGGCAAACGUGGCGCAUUUUUAAAUGGUCACGUUUGGCAGUUUAAGCGCCUCGGUGGGGCAAC ....................................(((.((((((((((.((((....)))))))))))))).))).......((((.....))))... (-24.80 = -25.20 + 0.40)
Location | 11,578,065 – 11,578,162 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 85.16 |
Mean single sequence MFE | -22.26 |
Consensus MFE | -16.04 |
Energy contribution | -16.24 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.90 |
Structure conservation index | 0.72 |
SVM decision value | 1.87 |
SVM RNA-class probability | 0.980810 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11578065 97 - 27905053 GUUGCCCCACCGAGGCGCUUAAACUGCCAAACGUGACCAUUUAAAAAUGCGCCACGUUUGCCAAGUAAAAUAACAAAAAC-A--AAAAAAUGGGAAAACU (((..((((....(((((.......)).(((((((.(((((....)))).).))))))))))..((......))......-.--......))))..))). ( -22.50) >DroSec_CAF1 107041 94 - 1 GUUGCCCCACCGAGGCGCUUAAACUGCCAAACGUGACCAUUUAAAAAUGCGCCACGUUUGCCAAGUAAAAUAACAAAAA------AAAUAUGGGAAAACU (((..((((....(((((.......)).(((((((.(((((....)))).).))))))))))..((......)).....------.....))))..))). ( -22.50) >DroSim_CAF1 111008 98 - 1 GUUGCCCCACCGAGGCGCUUAAACUGCCAAACGUGACCAUUUAAAAAUGCGCCACGUUUGCCAAGUAAAAUAACAAAAAAAA--AAAAAAUGGGAAAACU (((..((((....(((((.......)).(((((((.(((((....)))).).))))))))))..((......))........--......))))..))). ( -22.50) >DroYak_CAF1 108119 100 - 1 GUUGCCCCACCGAGGCGCUUAAACUGCCAAACGUGACCAUUUAAAAAUGCGCCACGUUUGCCAAGCAAAAUAACAAAAAAAAGAAACGAAACGAAAAACU ((((((.......)))(((.....((.((((((((.(((((....)))).).)))))))).)))))..................)))............. ( -19.10) >DroAna_CAF1 194233 86 - 1 GUUGCCUUGGCGUGGCGCUUAAACUGCGAAACGUGACCAUUUAAAAAUGCGCCACGUUUGGCAAAGAAA------------A--AAAAAACGGAGAAACA .(((((..((((((((((..............................)))))))))).))))).....------------.--................ ( -24.71) >consensus GUUGCCCCACCGAGGCGCUUAAACUGCCAAACGUGACCAUUUAAAAAUGCGCCACGUUUGCCAAGUAAAAUAACAAAAA__A__AAAAAAUGGGAAAACU ((((((.......)))........((.((((((((.(((((....)))).).)))))))).)).................................))). (-16.04 = -16.24 + 0.20)
Location | 11,578,097 – 11,578,190 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 80.12 |
Mean single sequence MFE | -28.15 |
Consensus MFE | -15.73 |
Energy contribution | -16.40 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.11 |
Structure conservation index | 0.56 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.731018 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11578097 93 + 27905053 CUUGGCAAACGUGGCGCAUUUUUAAAUGGUCACGUUUGGCAGUUUAAGCGCCUCGGUGGGGCAACGAAAAUACAUCAAAGCGGCG---------CGAAAAGU .(((.((((((((((.((((....)))))))))))))).))).....(((((.(..((((....)(......).)))..).))))---------)....... ( -33.00) >DroVir_CAF1 109935 95 + 1 --UGGCAAACGUGGCGCAUUUUUAAAUGGUCACGUUUUGCAGUUUAAGCGCCAGGC--AGGCA--GCAAAUACAUCAAAGCGGCGAAAGCGACGCG-AAAGU --..(((((((((((.((((....)))))))))).))))).......(((((....--.))).--))............(((((....))..))).-..... ( -30.80) >DroGri_CAF1 256144 95 + 1 --UGGCAAACGGGGCGCAUUUUUAAAUGGUCACGUUUUGCAGUUUAAGCGCCAGGC--AGGCA--GCAAAUACAUCAAAGCGGCGAAGGCGACGCG-AAACU --..(((((((.(((.((((....))))))).)).)))))(((((..(((((....--.))).--))............(((((....))..))).-))))) ( -26.90) >DroWil_CAF1 189557 90 + 1 -UUGGCAAACGUGGCGCAUUUUUAAAUGGUCACGUUUUUCAGUUUAAGCGCCAAAUAAAGGGAAAAGAACAACAUCAAAGCGU-----------UGAAAAGU -((((((((((((((.((((....)))))))))))))....((....)))))))...............((((........))-----------))...... ( -22.40) >DroMoj_CAF1 106309 84 + 1 --UGGCAAACGUGGCGCAUUUUUAAAUGGUCACGUUCUGCAGUUUAAGCGCCUGGC--AGCCA--GCAAAUACAUCAAAGCGGCGA------------AAGU --..(((((((((((.((((....)))))))))))).)))........(((((((.--..)))--((............)))))).------------.... ( -23.90) >DroAna_CAF1 194254 92 + 1 UUUGCCAAACGUGGCGCAUUUUUAAAUGGUCACGUUUCGCAGUUUAAGCGCCACGCCAAGGCAACGAAAAUACAUCAAAGCGGCG---------CGA-AAGU .((((.(((((((((.((((....))))))))))))).)))).....(((((.(((....))...((.......))...).))))---------)..-.... ( -31.90) >consensus __UGGCAAACGUGGCGCAUUUUUAAAUGGUCACGUUUUGCAGUUUAAGCGCCAGGC__AGGCA__GCAAAUACAUCAAAGCGGCG_________CG_AAAGU ...((((((((((((.((((....))))))))))))).((.......))))).................................................. (-15.73 = -16.40 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:45 2006