Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,575,023 – 11,575,123 |
Length | 100 |
Max. P | 0.995234 |
Location | 11,575,023 – 11,575,123 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 91.80 |
Mean single sequence MFE | -24.12 |
Consensus MFE | -21.96 |
Energy contribution | -21.80 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.14 |
Mean z-score | -1.91 |
Structure conservation index | 0.91 |
SVM decision value | 2.55 |
SVM RNA-class probability | 0.995234 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11575023 100 + 27905053 UUCGUUUUCAAUCUCCAGGUCCACAAUUUCAUCCAUUACCCGGGAAUUUCAAGUGCUAGACCCCAGAGGUACGCACUUUAACCACAAUUGGCGGCCAUUU .................((((..(((((...(((........))).....((((((...(((.....)))..)))))).......)))))..)))).... ( -20.50) >DroSec_CAF1 104091 100 + 1 UUCGUUUUCAAUUUCCAGGUCUACAAUUUCAUCCAUAGCCCGGGCAUUUCAAGUGCUGGACCCCAGAGGUCCACACUUUAACCACAAUUGGCGGCCAUUU .................((((..(((((.........((....)).....(((((.((((((.....))))))))))).......)))))..)))).... ( -26.00) >DroSim_CAF1 108036 100 + 1 UUCGUUUUCAAUUUCCAGGUCUACAAUUUCAUCCAUUACCCGGGCAUUUCAAGUGCUGGACCCCAGAGGUCCGCACUUUAACCACAAUUGGCGGCCAUUU .................((((..(((((...(((.......)))......((((((.(((((.....))))))))))).......)))))..)))).... ( -25.60) >DroEre_CAF1 107250 100 + 1 UUCGCUCUCAAUCUCCAGGCUUACAAUUUCAACCAUUACUCGGGCAUUUCAAGUGCUGGACCCCAGAGGUCCGCACUUCAACCACAAUUGGCGGCCAUUU .................((((..(((((....((.......)).......((((((.(((((.....))))))))))).......)))))..)))).... ( -26.40) >DroYak_CAF1 105090 100 + 1 UUCGUUUCCACUCUCCAGGUUUACAAUUUCAUCCAUUACUCGGGCAAUUCAAGUGUUGGACCCCAGAGGUCCGCACUUUAACCACAAUUGGCGGCCAUUU ...((..((........))...))..................(((.....((((((.(((((.....)))))))))))...(((....)))..))).... ( -22.10) >consensus UUCGUUUUCAAUCUCCAGGUCUACAAUUUCAUCCAUUACCCGGGCAUUUCAAGUGCUGGACCCCAGAGGUCCGCACUUUAACCACAAUUGGCGGCCAUUU .................((((..(((((....((.......)).......(((((.((((((.....))))))))))).......)))))..)))).... (-21.96 = -21.80 + -0.16)
Location | 11,575,023 – 11,575,123 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 91.80 |
Mean single sequence MFE | -30.24 |
Consensus MFE | -25.99 |
Energy contribution | -26.11 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.19 |
Mean z-score | -1.85 |
Structure conservation index | 0.86 |
SVM decision value | 1.74 |
SVM RNA-class probability | 0.974757 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11575023 100 - 27905053 AAAUGGCCGCCAAUUGUGGUUAAAGUGCGUACCUCUGGGGUCUAGCACUUGAAAUUCCCGGGUAAUGGAUGAAAUUGUGGACCUGGAGAUUGAAAACGAA ...(((((((.....)))))))((((((..(((.....)))...))))))..(((..((((((.(..(......)..)..))))))..)))......... ( -28.80) >DroSec_CAF1 104091 100 - 1 AAAUGGCCGCCAAUUGUGGUUAAAGUGUGGACCUCUGGGGUCCAGCACUUGAAAUGCCCGGGCUAUGGAUGAAAUUGUAGACCUGGAAAUUGAAAACGAA ...(((((((.....)))))))(((((((((((.....)))))).)))))..(((..((((((((..(......)..))).)))))..)))......... ( -34.40) >DroSim_CAF1 108036 100 - 1 AAAUGGCCGCCAAUUGUGGUUAAAGUGCGGACCUCUGGGGUCCAGCACUUGAAAUGCCCGGGUAAUGGAUGAAAUUGUAGACCUGGAAAUUGAAAACGAA ...(((((((.....)))))))(((((((((((.....))))).))))))..(((..((((((..((.(......).)).))))))..)))......... ( -32.10) >DroEre_CAF1 107250 100 - 1 AAAUGGCCGCCAAUUGUGGUUGAAGUGCGGACCUCUGGGGUCCAGCACUUGAAAUGCCCGAGUAAUGGUUGAAAUUGUAAGCCUGGAGAUUGAGAGCGAA ....((((((.....)))))).(((((((((((.....))))).))))))....(((((((.....((((.........))))......))).).))).. ( -29.60) >DroYak_CAF1 105090 100 - 1 AAAUGGCCGCCAAUUGUGGUUAAAGUGCGGACCUCUGGGGUCCAACACUUGAAUUGCCCGAGUAAUGGAUGAAAUUGUAAACCUGGAGAGUGGAAACGAA ...(((((((.....)))))))........(((((..(((((((..(((((.......)))))..)))))...........))..))).))(....)... ( -26.30) >consensus AAAUGGCCGCCAAUUGUGGUUAAAGUGCGGACCUCUGGGGUCCAGCACUUGAAAUGCCCGGGUAAUGGAUGAAAUUGUAGACCUGGAGAUUGAAAACGAA ...(((((((.....)))))))(((((((((((.....))))).))))))..(((..((((((.................))))))..)))......... (-25.99 = -26.11 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:42 2006