Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,574,244 – 11,574,337 |
Length | 93 |
Max. P | 0.507337 |
Location | 11,574,244 – 11,574,337 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 91.41 |
Mean single sequence MFE | -20.09 |
Consensus MFE | -16.60 |
Energy contribution | -16.52 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.18 |
Mean z-score | -1.75 |
Structure conservation index | 0.83 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.507337 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11574244 93 + 27905053 CUUUUCCCGCUUGACCU----GUUGGCAAUUUCAGCUCUGUAGUGAAAGCCAUAAAAUCGUGAUAAAAUUGGCCA-ACUUUUAUUUUAAUUGCCAGCG .................----((((((((((..........(((....((((.................))))..-)))........)))))))))). ( -19.00) >DroSec_CAF1 103318 93 + 1 CUUUUCCCGCUUGACCU----GUUGGCAAUUUCACCUCUGUAGUGAAAGCCAUAAAAUCGUAAUAAAAUUGGCCA-ACUUUUAUUUUAAUUGCCAGCG .................----((((((((((((((.......))))))((((.................))))..-.............)))))))). ( -20.43) >DroSim_CAF1 107270 93 + 1 CUUUUCCCGCUUGACCU----GUUGGCAAUUCCACCUCUGUAGUGAAAGCCAUAAAAUCGUAAUAAAAUUGGCCA-ACUUUUAUUUUAAUUGCCAGCG .................----((((((((((.(((.......)))...((((.................))))..-...........)))))))))). ( -18.43) >DroEre_CAF1 106516 93 + 1 CUUUUCCCGCUUGACCU----GUUGGCAAUUUCACCUCCCUGGUGAAAGCCAUAAAAUCGUAAUAAAAUUGGCCA-ACUUUUAUUUUAAUUGCCAGCG .................----(((((((((((((((.....)))))))((((.................))))..-.............)))))))). ( -25.03) >DroYak_CAF1 104320 93 + 1 CUUUUCCCGCUUGACCU----GUUGGCAAUUUCACCUCUGCAGUGAAAGCCAUAAAAUCGUAAUAAAAUUGGCCA-ACUUUUAUUUUAAUUGCCAGCG .................----((((((((((((((.......))))))((((.................))))..-.............)))))))). ( -20.43) >DroAna_CAF1 190452 98 + 1 CGUUUCCCGCUCGACUUCCCACUUGGUAAUUUCUUCUUUUGAGUGAAAGUCAUAAAAUCGUAAUAAAAUCGGCCAAACUUUUAAUUUAAUUGCCAGCG .......((((.(((((..((((..(............)..)))).)))))........(((((.((((..(........)..)))).))))).)))) ( -17.20) >consensus CUUUUCCCGCUUGACCU____GUUGGCAAUUUCACCUCUGUAGUGAAAGCCAUAAAAUCGUAAUAAAAUUGGCCA_ACUUUUAUUUUAAUUGCCAGCG .....................((((((((((..........(((....((((.................))))...)))........)))))))))). (-16.60 = -16.52 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:40 2006