Locus 438

Sequence ID 3R_DroMel_CAF1
Location 1,657,208 – 1,657,320
Length 112
Max. P 0.546259
window713

overview

Window 3

Location 1,657,208 – 1,657,320
Length 112
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 75.88
Mean single sequence MFE -39.13
Consensus MFE -21.06
Energy contribution -21.37
Covariance contribution 0.31
Combinations/Pair 1.36
Mean z-score -1.60
Structure conservation index 0.54
SVM decision value 0.03
SVM RNA-class probability 0.546259
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1657208 112 + 27905053
AAUUAUAUCGGGCUGCGUCAUUCUGCCGCUGUCUCUGCCGCUGCUACUGCCUCUGCCACCGCGAUAUCAGGCU----UCUAGUAUCAG----CCUCUGUCGCUGUCGCCGACGCAGUGGG
.........((((.(((.(.....).))).)))).........(((((((.((.((.((.((((((..(((((----.........))----))).)))))).)).)).)).))))))). ( -38.40)
>DroSec_CAF1 4550 112 + 1
AAUUAUAUCGGACUGCGCCAUUCUGCCGCUGUCUCUGCCGCAGCCACUGCCUCUGCCACCGCGAUAUCAGGCU----UCUAGUAUCAG----CCUCUGUCGCAGUCGCCGACGCAGUGGG
.........((......))...((((.((.......)).))))(((((((.((.((.((.((((((..(((((----.........))----))).)))))).)).)).)).))))))). ( -41.90)
>DroSim_CAF1 5811 112 + 1
AAUUAUAUCGGACUGCGCCAUUCUGCCGCUGUCUCUGCCGCUGCCACUGCCUCUGCCACCGCGAUAUCAGGCU----UCUAGUAUCAG----CCUCUGUCGCAGUCGCCGACGCAGUGGG
.........((((.(((.(.....).))).)))).........(((((((.((.((.((.((((((..(((((----.........))----))).)))))).)).)).)).))))))). ( -41.30)
>DroEre_CAF1 6422 100 + 1
AAUUAUAUCGGGCUACGUAACUCAGCCG------------CGGACGCUGUCUCUGCCACCGCGAUAUCAGGCU----UCUAGUAUCAG----CCUCUGUCGCCGUCGCCGACGCAGCUGC
.......(((((((.........)))).------------)))..(((((.((.((.((.((((((..(((((----.........))----))).)))))).)).)).)).)))))... ( -34.50)
>DroYak_CAF1 6399 100 + 1
AAUUAUAUCGGGCGGCGCACUUCUGCCG------------CGGACGCUGCCUCUGCCACCGCGAUAUCAGGCU----UCUAGUAUCAG----CCUCUGUCGCAGUCGCCGACGCAGUUGC
...........((((((......)))))------------)....(((((.((.((.((.((((((..(((((----.........))----))).)))))).)).)).)).)))))... ( -37.20)
>DroAna_CAF1 6837 114 + 1
AAUUAUGUCGGU------GGUUCGUGAGCUGCCUCGGCCAUUGCCUCGGCCUCUGCCACUGCUAUGUAGUGCUCUCGUCUGAUAUGGGGUUAGCUCUGUCGCAGUCGCAGUCGUCGUGGA
......(((((.------(((.(....)..)))))))).....((.((((..((((.(((((....(((.(((..(.((......)).)..))).)))..))))).))))..)))).)). ( -41.50)
>consensus
AAUUAUAUCGGGCUGCGCCAUUCUGCCGCUGUCUCUGCCGCUGCCACUGCCUCUGCCACCGCGAUAUCAGGCU____UCUAGUAUCAG____CCUCUGUCGCAGUCGCCGACGCAGUGGG
...........................................(((((((.((.((.((.((((((..(((.....................))).)))))).)).)).)).))))))). (-21.06 = -21.37 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:11 2006