Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,559,920 – 11,560,011 |
Length | 91 |
Max. P | 0.999844 |
Location | 11,559,920 – 11,560,011 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 92.73 |
Mean single sequence MFE | -26.11 |
Consensus MFE | -24.23 |
Energy contribution | -24.12 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.10 |
Mean z-score | -3.11 |
Structure conservation index | 0.93 |
SVM decision value | 4.23 |
SVM RNA-class probability | 0.999844 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11559920 91 + 27905053 ACGGCACACACUGCGUAUACGCGACAUGCACGCAGCAGAGCGAACACAUUGCGUAUACGCAUCAUGCAGGCAACAUAAACAUUCACAAAUU ...(((.....(((((((((((((..((..(((......)))..))..)))))))))))))...))).(....)................. ( -28.70) >DroSec_CAF1 93760 91 + 1 GCGGCACACACUGCGUAUACGCGACAUGCAAGCAGCAGAGCGAACACAUUGCGUAUACGCAUCAUGCAGGCACCAUAAACAUUCGCAAAUG ((((((.....(((((((((((((..((...((......))...))..)))))))))))))...))).(....).........)))..... ( -28.90) >DroSim_CAF1 97267 91 + 1 ACGGCACACACUGCGUAUACGCGACAUGCAAGCAGCAGAGCGAACACAUUGCGUAUACGCAUCAUGCAGGCACCAUAAACAUUCGCAAAUG ...(((.....(((((((((((((..((...((......))...))..)))))))))))))...)))........................ ( -25.40) >DroEre_CAF1 96647 88 + 1 ---GCACACACUGCGUAUACGCGACAUGCAAGCAGCAGAGCGAACACAUUGCGUAUACGCAUCAUGCAGGCACCAUAAACAUUCGCAAAUA ---(((.....(((((((((((((..((...((......))...))..)))))))))))))...)))........................ ( -25.40) >DroYak_CAF1 94286 88 + 1 ---GCACACACUGCGUAUACGCGACAUGCAAGCAGCAAAGCGAACACAUUGCGUAUACGCAUCAUGCAGGCACCAUAAACAUUCGCAAGUG ---.....((((((((((((((((..((...((......))...))..))))))))))))....(((.................))))))) ( -25.83) >DroAna_CAF1 178626 91 + 1 AGGGUACACACUGCGUAUACGCAACAUGCAAGCACAAAACCGAACACAUUGCGUAUACGCAUCAUGCAGGCACCAUAAACAUUCGUAAAUA .((((.((...(((((((((((((..((...(........)...))..)))))))))))))...))...)).))................. ( -22.40) >consensus ACGGCACACACUGCGUAUACGCGACAUGCAAGCAGCAGAGCGAACACAUUGCGUAUACGCAUCAUGCAGGCACCAUAAACAUUCGCAAAUG ...(((.....(((((((((((((..((...((......))...))..)))))))))))))...)))........................ (-24.23 = -24.12 + -0.11)
Location | 11,559,920 – 11,560,011 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 92.73 |
Mean single sequence MFE | -34.58 |
Consensus MFE | -30.85 |
Energy contribution | -31.38 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.04 |
Mean z-score | -3.54 |
Structure conservation index | 0.89 |
SVM decision value | 3.76 |
SVM RNA-class probability | 0.999596 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11559920 91 - 27905053 AAUUUGUGAAUGUUUAUGUUGCCUGCAUGAUGCGUAUACGCAAUGUGUUCGCUCUGCUGCGUGCAUGUCGCGUAUACGCAGUGUGUGCCGU ........................(((((.(((((((((((.((((((.(((......))).)))))).)))))))))))...)))))... ( -34.60) >DroSec_CAF1 93760 91 - 1 CAUUUGCGAAUGUUUAUGGUGCCUGCAUGAUGCGUAUACGCAAUGUGUUCGCUCUGCUGCUUGCAUGUCGCGUAUACGCAGUGUGUGCCGC .................((..(..((((..(((((((((((.((((((..((......))..)))))).))))))))))))))))..)).. ( -35.40) >DroSim_CAF1 97267 91 - 1 CAUUUGCGAAUGUUUAUGGUGCCUGCAUGAUGCGUAUACGCAAUGUGUUCGCUCUGCUGCUUGCAUGUCGCGUAUACGCAGUGUGUGCCGU ...............((((..(..((((..(((((((((((.((((((..((......))..)))))).))))))))))))))))..)))) ( -36.20) >DroEre_CAF1 96647 88 - 1 UAUUUGCGAAUGUUUAUGGUGCCUGCAUGAUGCGUAUACGCAAUGUGUUCGCUCUGCUGCUUGCAUGUCGCGUAUACGCAGUGUGUGC--- ........................(((((.(((((((((((.((((((..((......))..)))))).)))))))))))...)))))--- ( -31.30) >DroYak_CAF1 94286 88 - 1 CACUUGCGAAUGUUUAUGGUGCCUGCAUGAUGCGUAUACGCAAUGUGUUCGCUUUGCUGCUUGCAUGUCGCGUAUACGCAGUGUGUGC--- ((((.((....))....))))...(((((.(((((((((((.((((((..((......))..)))))).)))))))))))...)))))--- ( -32.80) >DroAna_CAF1 178626 91 - 1 UAUUUACGAAUGUUUAUGGUGCCUGCAUGAUGCGUAUACGCAAUGUGUUCGGUUUUGUGCUUGCAUGUUGCGUAUACGCAGUGUGUACCCU .................(((((..((((..((((((((((((((((((..(((.....))).))))))))))))))))))))))))))).. ( -37.20) >consensus CAUUUGCGAAUGUUUAUGGUGCCUGCAUGAUGCGUAUACGCAAUGUGUUCGCUCUGCUGCUUGCAUGUCGCGUAUACGCAGUGUGUGCCGU .................(((((..((((..(((((((((((.((((((..((......))..)))))).)))))))))))))))))))).. (-30.85 = -31.38 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:36 2006