Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,551,503 – 11,551,596 |
Length | 93 |
Max. P | 0.864385 |
Location | 11,551,503 – 11,551,596 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 77.77 |
Mean single sequence MFE | -23.27 |
Consensus MFE | -8.35 |
Energy contribution | -7.94 |
Covariance contribution | -0.41 |
Combinations/Pair | 1.31 |
Mean z-score | -2.82 |
Structure conservation index | 0.36 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.864385 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11551503 93 + 27905053 UGU-CCA--GCAGGUGUG--AGUUAAAAAUUC--CACACAAGGGUUGCGA---AUAGGGGUAUUAAAAAUGAAACCAAAACAAGCAGCCAACAUCAAAAGCUG ...-.((--((..(((((--(((.....))).--)))))...((((((..---.....(((.(((....))).))).......))))))..........)))) ( -24.54) >DroVir_CAF1 78409 95 + 1 UGUGACA--CCAGGUGAG--GGCGA----UUCUGUCCGCUAGGGUUGCUCCAGACACAAACAUUAAAAAUGAAACCAAAACAAACAGCAAACAUCAAAAGCUG ((((.((--(...))).(--(((((----(((((.....))))))))).))...))))..........................((((...........)))) ( -18.90) >DroPse_CAF1 77026 92 + 1 U--------UCAGGUGUGGGGGUUAAAAAUCC--CGCACAAGGGAUGCUUC-CACGCGGGUAUUAAAAAUAAAACCAGAACAAACAGCAAACAUCAAAAGCUG (--------((..((((((((((.....((((--(......))))))))))-))))).(((.(((....))).))).)))....((((...........)))) ( -27.70) >DroSec_CAF1 85330 93 + 1 CGU-CCA--GCAGGUGUG--AGUUAAAAAUUC--CACACAAGGGUUGCAA---AAAGGGGUAUUAAAAAUGAAACCAAAACAAACAGCCAACAUCAAAAGCUG ...-.((--((..(((((--(((.....))).--)))))...(((((...---.....(((.(((....))).)))........)))))..........)))) ( -19.89) >DroAna_CAF1 170960 93 + 1 CGU-GCAAGCCAGGUGUG--AGUUAAAAAUUC--CACACAAGGGUUGUGC---A--CGAGUAUUAAAAAUGAAACCAAAACAAACAGCAAACAUCAAAAGCUG (((-(((((((..(((((--(((.....))).--)))))...)))).)))---)--))..........................((((...........)))) ( -23.60) >DroPer_CAF1 77504 92 + 1 U--------UCAGGUGUGGGGGUUAAAAAUCC--CGCACAAGGGUUGCUUC-CACGCGGGUAUUAAAAAUAAAACCAGAACAAACAGCAAACAUCAAAAGCUG (--------((..((((((((((.......((--(......)))..)))))-))))).(((.(((....))).))).)))....((((...........)))) ( -25.00) >consensus UGU__CA__CCAGGUGUG__AGUUAAAAAUUC__CACACAAGGGUUGCUA___ACACGGGUAUUAAAAAUGAAACCAAAACAAACAGCAAACAUCAAAAGCUG .............(((((..(((.....)))...)))))...((((..........................))))........((((...........)))) ( -8.35 = -7.94 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:34 2006