Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,547,037 – 11,547,128 |
Length | 91 |
Max. P | 0.566262 |
Location | 11,547,037 – 11,547,128 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 84.85 |
Mean single sequence MFE | -22.19 |
Consensus MFE | -17.33 |
Energy contribution | -17.50 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.19 |
Mean z-score | -1.78 |
Structure conservation index | 0.78 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.566262 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11547037 91 + 27905053 --U-UGUGUCGCCUC---------AAUGGUAUUUCUCCUUGCCAUCAGCUUUAAGCGACAAAAUUGUUUAUGAUUAUCAUUUAGCGAAUAUUUAUGGACAAAA---------- --.-..((((((...---------.((((((........)))))).........))))))...((((((((((.((((.......).))).))))))))))..---------- ( -19.92) >DroSec_CAF1 80824 92 + 1 --U-UGUGUCGCCUC---------AAUGGCAUUUCUCCUUGCCAUCAGCUUCAAGCGACAAAAUUGUUUAUGAUUAUCAUUUAGCGAAUAUUUAUGGACAAAAA--------- --.-..((((((...---------.((((((........)))))).........))))))...((((((((((.((((.......).))).))))))))))...--------- ( -21.92) >DroSim_CAF1 83528 93 + 1 --U-UGUGUCGCCUC---------AAUGGCAUUUCUCCUUGCCAUCAGCUUUAAGCGACAAAAUUGUUUAUGAUUAUCAUUUAGCGAAUAUUUAUGGACAAAAAA-------- --.-..((((((...---------.((((((........)))))).........))))))...((((((((((.((((.......).))).))))))))))....-------- ( -21.92) >DroEre_CAF1 83575 103 + 1 ACUAUAUGUCGCUUC---------AAUGGCAUUUCUCCUGGCCAUCAGCUUUAAGCGGCAAAAUUGUUUAUGAUUAUCAUUUAGCGAAUAUUUAUGGACAGCAAGAGGCAGG- ......((((((((.---------.(((((..........))))).......))))))))....(((((((((.((((.......).))).)))))))))((.....))...- ( -21.50) >DroYak_CAF1 80519 102 + 1 ACU-UAUGUCGCCUC---------AAUGGCAUUUCUCCUUGCCAUCAGCUUUAAGCGACAAAAUUGUUUAUGAUUAUCAUUUAGCGAAUAUUUAUGGAUAAAAAGAGGCAGC- ...-......(((((---------.((((((........))))))..((.....)).......((((((((((.((((.......).))).))))))))))...)))))...- ( -24.40) >DroAna_CAF1 166970 110 + 1 -CU-UAUGCCCCCUCAUACCACCCAAUGGCAUUUCUCCUUGCCAUCAGCUUUAAGCGACAAAAUUGUUUAUGAUUAUUAUUUAGCGAUAAUUUAUGGACCAAACG-GGCAGCU -..-..(((((..((..........((((((........))))))..((.....)))).......((((((((..((((((....)))))))))))))).....)-))))... ( -23.50) >consensus __U_UAUGUCGCCUC_________AAUGGCAUUUCUCCUUGCCAUCAGCUUUAAGCGACAAAAUUGUUUAUGAUUAUCAUUUAGCGAAUAUUUAUGGACAAAAAG________ ......((((((.............((((((........)))))).........))))))...((((((((((.((((.......)).)).))))))))))............ (-17.33 = -17.50 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:32 2006