Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,546,850 – 11,546,942 |
Length | 92 |
Max. P | 0.522168 |
Location | 11,546,850 – 11,546,942 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 92.30 |
Mean single sequence MFE | -23.50 |
Consensus MFE | -19.02 |
Energy contribution | -18.55 |
Covariance contribution | -0.47 |
Combinations/Pair | 1.17 |
Mean z-score | -2.02 |
Structure conservation index | 0.81 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.522168 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11546850 92 + 27905053 AACCCCCGGUGCAAAGCUGUAAAUGUGCGGGUAUUUGCACAACACACGCUGACCAUAAUAUAUGGUUAAAUCUGUGUUUUAUUUAUACA--CAC ........(((((((.(((((....)))))...)))))))((((((...((((((((...))))))))....))))))...........--... ( -24.10) >DroSec_CAF1 80637 92 + 1 AACUCCCGGUGCAAAGCUGUAAAUGUGCGGGUAUUUGCAGAACACACGCUGACCAUAAUAUAUGGUUAAAUCUGUGUUUUAUUUAUCCA--CAC .......((.(((((.(((((....)))))...)))))((((((((...((((((((...))))))))....))))))))......)).--... ( -23.70) >DroSim_CAF1 83341 92 + 1 AACUCCCGGUGCAAAGCUGUAAAUGUGCGGGUAUUUGCAGAACACACGCUGACCAUAAUAUAUGGUUAAAUCUGUGUUUUAUUUAUCCA--CAC .......((.(((((.(((((....)))))...)))))((((((((...((((((((...))))))))....))))))))......)).--... ( -23.70) >DroEre_CAF1 83395 91 + 1 AACC-CCGAUUCAAAGCUGUAAAUGUGCGGGUAUUUACAGGACACACGCUGACCAUAAUAUAUGGUUAAAUCUGUGUUUUAUUUAUCCA--CAC ....-...................(((.(((((..((..(((((((...((((((((...))))))))....)))))))))..))))).--))) ( -21.50) >DroYak_CAF1 80338 92 + 1 AGCCCCCGAUUCAAAGCUGUAAAUGUGCGGGUAUUUGCAGAACACACGCUGACCAUAAUAUAUGGUUAAAUCUGUGUUUUAUUUAUCCA--CAC ........................(((.(((((..((..(((((((...((((((((...))))))))....)))))))))..))))).--))) ( -21.60) >DroAna_CAF1 166790 94 + 1 GACCGCAGGUUGUGAGCUGUAAAUGUGCGGGUAUUUACAGAACGCACGCUGACCAUAAUAUAUGGUUGAAUCUGUGUUUUAUUUAUCCACACAC ...(((((((((((..(((((((((......)))))))))..))).....(((((((...))))))).)))))))).................. ( -26.40) >consensus AACCCCCGGUGCAAAGCUGUAAAUGUGCGGGUAUUUGCAGAACACACGCUGACCAUAAUAUAUGGUUAAAUCUGUGUUUUAUUUAUCCA__CAC ................(((((((((......)))))))))((((((...((((((((...))))))))....))))))................ (-19.02 = -18.55 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:31 2006