Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,537,823 – 11,537,923 |
Length | 100 |
Max. P | 0.599163 |
Location | 11,537,823 – 11,537,923 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 82.33 |
Mean single sequence MFE | -25.40 |
Consensus MFE | -14.07 |
Energy contribution | -17.70 |
Covariance contribution | 3.63 |
Combinations/Pair | 1.10 |
Mean z-score | -2.23 |
Structure conservation index | 0.55 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.599163 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11537823 100 + 27905053 CAUGAAUAAUGAAAAAGCAACGUGAAUAUAUUUCCUUAGGUAGUUCGGCAGUGUCGAGGGAUCGGCGGAGGUGGAUUUGCCAAAGGGGAGAUGUGGAAAU (((.....)))...............(((((((((((.(((((.((.((..((((((....))))))...)).)).)))))...)))))))))))..... ( -27.40) >DroSec_CAF1 71645 100 + 1 CAUGAAUAAUGAAAAAGCAACGUGAAUAUAUUUCCUUAGGUAGUUCGGCAGUGUCGAGGGAUCGGCGGAGGUGGAUUUGCCGAAGGGUAGAUGUGGAAAU (((.....)))...............(((((((((((.(((((.((.((..((((((....))))))...)).)).)))))..)))).)))))))..... ( -25.30) >DroYak_CAF1 70325 100 + 1 CAUGAAUAAUGAAAAAGCAACGUGAAUAUAUUUCCUUAGGUAGUUCGGCAGUGUCGAGGGAUCGGCGGAGGUGGACUUGCCGAGGGGGGAAUGUGGAAAU (((.....)))...............(((((((((((.(((((((((.(..((((((....))))))..).))))).))))...)))))))))))..... ( -30.50) >DroAna_CAF1 157837 86 + 1 CAUGAAUAAUGAAAAAGCAACGUGAAUAUAUUUCCUUUCGUAUUUCAGGGGUGUCACGGGA-----------GGAUUUCCCAACAUAGAAA---GGAAUA (((.....)))....................((((((((.(((....((((.(((.(....-----------)))).))))...)))))))---)))).. ( -18.40) >consensus CAUGAAUAAUGAAAAAGCAACGUGAAUAUAUUUCCUUAGGUAGUUCGGCAGUGUCGAGGGAUCGGCGGAGGUGGAUUUGCCAAAGGGGAAAUGUGGAAAU (((.....)))...............(((((((((((.(((((.((.((..((((((....))))))...)).)).)))))...)))))))))))..... (-14.07 = -17.70 + 3.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:30 2006