Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,642,491 – 1,642,602 |
Length | 111 |
Max. P | 0.942280 |
Location | 1,642,491 – 1,642,602 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 72.05 |
Mean single sequence MFE | -41.94 |
Consensus MFE | -21.86 |
Energy contribution | -22.74 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.20 |
Mean z-score | -1.99 |
Structure conservation index | 0.52 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.942280 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1642491 111 + 27905053 CACGUCCACAUCCACACCCACACCCGCACCCACACCAAUAUCCCUGCCCGCGACCCGUUCCC--------GGGCACAGGAUAGGGUUUCUUUCGCCCAGGCGGGUCGGGUGGCUAGGAG ..........(((.(((((..((((((...........(((((.((((((.((.....)).)--------)))))..)))))((((.......))))..)))))).)))))....))). ( -45.60) >DroSim_CAF1 21900 93 + 1 CACGUCCAC------------------ACCCACACCAAUAUCCCUGCCCGCGACCCGUUCCC--------GGGCACAGGAUAGGGUUUCCUUCGCCCAGGCGGGUCGGGUGGCUAGGGG .........------------------..............((((((((.(((((((..((.--------((((..((((.......))))..)))).))))))))).).))).)))). ( -43.00) >DroEre_CAF1 22853 99 + 1 C------ACGCCCACACCCA------UGCCCACACCAAUGUCCCUUUCCUCGACCCGUUCCC--------GGGAACAGGAUAGGGUUUCCUUCGCACAGGCGGGUCGGGUGACUAGGGG .------...(((.(((((.------.((((..........((((.((((...((((....)--------)))...)))).))))........((....)))))).)))))....))). ( -37.80) >DroYak_CAF1 20122 105 + 1 CACUUCCACGUCCACACCCA------CACCCACACCAAUCGCCCCUUCCUCCACCCGUUUCC--------GCGAACAGGAUAGGGUUUCCUUCGCACAGGCGGGUCGGGUGGCUAGGGG ....................------...............(((((.(((((((((((((..--------((((..((((.......))))))))..)))))))).))).))..))))) ( -34.60) >DroAna_CAF1 22044 111 + 1 CACGCCCACACCCACUCGCAC-----CACCCAUUCCACAGGCUA---CUUUGCCCCGGCCCCAACGAGGGGGCGACCGGACAAAGUUUCCUUCGCCCAGGCGGGUCGAGUGGCGAGGGG ....(((....(((((((.((-----(...........(((..(---(((((((.((.((((.....)))).))...)).))))))..))).(((....)))))))))))))....))) ( -48.70) >consensus CACGUCCACACCCACACCCA______CACCCACACCAAUAUCCCUGCCCUCGACCCGUUCCC________GGGAACAGGAUAGGGUUUCCUUCGCCCAGGCGGGUCGGGUGGCUAGGGG ............................(((...(((..........((.((((((((((((........)))))).(((.......)))...((....)))))))))))))...))). (-21.86 = -22.74 + 0.88)
Location | 1,642,491 – 1,642,602 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 72.05 |
Mean single sequence MFE | -49.66 |
Consensus MFE | -23.08 |
Energy contribution | -24.00 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.24 |
Mean z-score | -1.82 |
Structure conservation index | 0.46 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.778498 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1642491 111 - 27905053 CUCCUAGCCACCCGACCCGCCUGGGCGAAAGAAACCCUAUCCUGUGCCC--------GGGAACGGGUCGCGGGCAGGGAUAUUGGUGUGGGUGCGGGUGUGGGUGUGGAUGUGGACGUG .(((((.((((((((((((((..(.(....)...((((..(((((((((--------(....)))).)))))).))))...)..).)))))).)))))..)).)).))).......... ( -53.50) >DroSim_CAF1 21900 93 - 1 CCCCUAGCCACCCGACCCGCCUGGGCGAAGGAAACCCUAUCCUGUGCCC--------GGGAACGGGUCGCGGGCAGGGAUAUUGGUGUGGGU------------------GUGGACGUG .((((.(((.(.(((((((((((((((.((((.......)))).)))))--------)))..))))))).))))))))..............------------------......... ( -46.00) >DroEre_CAF1 22853 99 - 1 CCCCUAGUCACCCGACCCGCCUGUGCGAAGGAAACCCUAUCCUGUUCCC--------GGGAACGGGUCGAGGAAAGGGACAUUGGUGUGGGCA------UGGGUGUGGGCGU------G .(((....((((((.((((((.((((....)...((((.((((...(((--------(....))))...)))).)))).))).)))).))...------)))))).)))...------. ( -45.60) >DroYak_CAF1 20122 105 - 1 CCCCUAGCCACCCGACCCGCCUGUGCGAAGGAAACCCUAUCCUGUUCGC--------GGAAACGGGUGGAGGAAGGGGCGAUUGGUGUGGGUG------UGGGUGUGGACGUGGAAGUG ..((...((((((.((..(((((..(.((.....((((.((((.(.(.(--------(....)).).).))))))))....)).)..))))))------).)).))))....))..... ( -42.50) >DroAna_CAF1 22044 111 - 1 CCCCUCGCCACUCGACCCGCCUGGGCGAAGGAAACUUUGUCCGGUCGCCCCCUCGUUGGGGCCGGGGCAAAG---UAGCCUGUGGAAUGGGUG-----GUGCGAGUGGGUGUGGGCGUG .(((.(((((((((..(((((((..(.((((..(((((((((.(..(((((......)))))).))))))))---)..))).).)..))))))-----)..))))).)))).))).... ( -60.70) >consensus CCCCUAGCCACCCGACCCGCCUGGGCGAAGGAAACCCUAUCCUGUGCCC________GGGAACGGGUCGAGGAAAGGGACAUUGGUGUGGGUG______UGGGUGUGGACGUGGACGUG .(((..(((((((....(((....)))........(((..(((((((((........)))))))))...)))...)))....))))..)))............................ (-23.08 = -24.00 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:10 2006