Locus 4369

Sequence ID 3R_DroMel_CAF1
Location 11,527,114 – 11,527,217
Length 103
Max. P 0.500000
window7142

overview

Window 2

Location 11,527,114 – 11,527,217
Length 103
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 83.03
Mean single sequence MFE -34.12
Consensus MFE -21.30
Energy contribution -22.40
Covariance contribution 1.10
Combinations/Pair 1.12
Mean z-score -1.73
Structure conservation index 0.62
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11527114 103 - 27905053
AGCCUGUAAUAAUCCCGGGCAAAUAUUACGCAUACGCAACGUGUGCGGAUGCGUGUGAGUGUGCCUAAGUUUGCAGGAGCU--CUCGAGUUUGCCUGGGU--GUUUG
.............(((((((((((..(((((((.((((.....)))).)))))))((((.((.(((........))).)).--)))).))))))))))).--..... ( -40.90)
>DroSec_CAF1 60687 105 - 1
AGCCUGUAAUAAUCCCGGGCAAAUAUUACGCAUACGCAACGUGUGCGGAUGCGUGUGAGUGUGCCUAAGUUUGCAGGAGCUCUCUCGAGUUUGCCUGGCU--GUUUG
..............((((((((((..(((((((.((((.....)))).))))))).(((.((.(((........))).)).)))....))))))))))..--..... ( -36.90)
>DroEre_CAF1 64202 103 - 1
AGCCUGUAAUAAUCCCGGGCAAAUAUUACGCAUACGCAACGUGUGCGUACGCCUGUGAGUGUGCCUAAGUUUGCAGGAGCU--CUCGAGUUUGCUUGGGU--GUUUG
..(((((((....(..(((((.....((((((((((...))))))))))(((......))))))))..).)))))))(((.--((((((....)))))).--))).. ( -37.40)
>DroYak_CAF1 59434 97 - 1
AGCCUGUAAUAAUCCCGUGCAAAUAUUACGCAUACGCCACGUGUG------CCAGUAUGUGUGCCUAAGUUUGCAGGAGCU--CUCGAGUUUGCUUGGGU--GUUUG
..(((((((.......(..((.(((((..(((((((...))))))------).))))).))..)......)))))))(((.--((((((....)))))).--))).. ( -31.82)
>DroAna_CAF1 147449 89 - 1
AGCCUGUAAUAAUCCCGAGCAAAUAUUACGUAUACGCACUGUGUGCGG----------GUGCUCCCAAGUUUGCAUG--------CAAGUGUGCCUGUGUGGGUUUG
((((..((..........((((((.....((((((.....))))))((----------(....)))..))))))..(--------((....)))...))..)))).. ( -23.60)
>consensus
AGCCUGUAAUAAUCCCGGGCAAAUAUUACGCAUACGCAACGUGUGCGGA_GCCUGUGAGUGUGCCUAAGUUUGCAGGAGCU__CUCGAGUUUGCCUGGGU__GUUUG
.......(((...(((((((((((....((((((((...)))))))).............................(((....)))..)))))))))))...))).. (-21.30 = -22.40 +   1.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:27 2006