Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,526,716 – 11,526,819 |
Length | 103 |
Max. P | 0.624021 |
Location | 11,526,716 – 11,526,819 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 83.60 |
Mean single sequence MFE | -20.67 |
Consensus MFE | -18.87 |
Energy contribution | -18.37 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.12 |
Mean z-score | -1.34 |
Structure conservation index | 0.91 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.624021 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11526716 103 - 27905053 AAAAAAAAAAAAAAUACUCAUACGCCGCGUGAGCCUCGCACAUUUUUACGUCUCC---------UAUUUGUGCACCGUGAAAAUAGGCAAUUUAUGUUUUUAAAUAAAGAGA ................(((....(((((....))...(((((.............---------....)))))............)))..(((((........)))))))). ( -19.93) >DroSec_CAF1 60292 99 - 1 AAAA----AGAAAAUACUCAUACGCCGCGUGAGCCUCGCACAUUUUUAAGUCUCC---------UAUUUGUGCACCGUGAAAAUAGGCAAUUUAUGUUUUCCAAUAAAGAGA ....----........(((....(((((....))...(((((.............---------....)))))............)))..(((((........)))))))). ( -19.93) >DroEre_CAF1 63816 103 - 1 AA---------AAAUACUCAUACGCCGCGUGAGCCUCGCACAUUUUUACGUCUCCUAUUUCUCCUAUUUAUGCACCGAGAAAAUUGGCAAUUUAUGCUCUUAAGCAAAGAGA ..---------.....(((....(((((....)).......................((((((.............))))))...)))......((((....))))..))). ( -19.52) >DroYak_CAF1 59029 94 - 1 AA---------AAAUACUCAUACGCCGCGUGAGCCUCGCACAUUUUUAGGUCUCU---------UAUUUGUGCACCGGGAAAAUUGGCAAUUUAUGCUUUGAAGCAAAGAGA ..---------.....(((....(((((....))...(((((....((((...))---------))..)))))............)))......((((....))))..))). ( -23.30) >consensus AA_________AAAUACUCAUACGCCGCGUGAGCCUCGCACAUUUUUACGUCUCC_________UAUUUGUGCACCGUGAAAAUAGGCAAUUUAUGCUUUUAAACAAAGAGA ................(((....(((((....))...(((((..........................)))))............)))......((((....))))..))). (-18.87 = -18.37 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:26 2006