Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,516,773 – 11,516,877 |
Length | 104 |
Max. P | 0.993789 |
Location | 11,516,773 – 11,516,877 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 79.87 |
Mean single sequence MFE | -27.48 |
Consensus MFE | -13.70 |
Energy contribution | -15.45 |
Covariance contribution | 1.75 |
Combinations/Pair | 1.17 |
Mean z-score | -2.79 |
Structure conservation index | 0.50 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.864598 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11516773 104 + 27905053 GGUUG-------UGCCAAAGAUAUAUGUAUGUAUAUGUACAUAUACAUACAUGCAUAUACUCGUAUGCCGGCGCUAAGAAAACCAACUUAAUUAUUUUCUCAAGGCGGAAG (((((-------((((........((((((((((((....))))))))))))((((((....)))))).)))))......))))............((((......)))). ( -29.50) >DroSec_CAF1 50419 96 + 1 GGUUG-------UGCCAAGGAUAUAUGUACAUAU--G------UACAUAUAUGCAUAUACUCGUAUGCCGGCGCUAAGAAAAACAACUUAAUUAUUUUCUCAGGGCGGAAG .....-------.(((....((((((((((....--)------)))))))))((((((....)))))).)))(((.((((((............))))))...)))..... ( -26.40) >DroSim_CAF1 52706 96 + 1 GGUUG-------UGCCAAGGAUAUAUGUAUGUAC--A------UAUGUAUAUGCAUAUACUCGUAUGCCGGCGCUAAGAAAAACAACUUAAUUAUUUUCUCAGGGCGGAAG ((...-------..))..(..(((((((((((((--.------...)))))))))))))..).....(((.(.((.((((((............)))))).))).)))... ( -27.80) >DroYak_CAF1 48849 95 + 1 GGUUGUGGGUCCUGCCAAGGAUAUAUGUAAAUGC--A------UACAUAUA--CAU----ACGUAUGCCAGCCUUAAGAAA-ACAACUUAAUUAUUUUCUCAGGGCUGAG- ....(((.(((((....))))).)))......((--(------(((.....--...----..))))))(((((((.(((((-(.((.....)).)))))).)))))))..- ( -26.20) >consensus GGUUG_______UGCCAAGGAUAUAUGUAUAUAC__A______UACAUAUAUGCAUAUACUCGUAUGCCGGCGCUAAGAAAAACAACUUAAUUAUUUUCUCAGGGCGGAAG (((..........)))...(((((((((((((((............))))))))))))).))......(.((.((.((((((............)))))).)).)).)... (-13.70 = -15.45 + 1.75)
Location | 11,516,773 – 11,516,877 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 79.87 |
Mean single sequence MFE | -27.62 |
Consensus MFE | -14.47 |
Energy contribution | -15.71 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.10 |
Mean z-score | -3.73 |
Structure conservation index | 0.52 |
SVM decision value | 2.42 |
SVM RNA-class probability | 0.993789 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11516773 104 - 27905053 CUUCCGCCUUGAGAAAAUAAUUAAGUUGGUUUUCUUAGCGCCGGCAUACGAGUAUAUGCAUGUAUGUAUAUGUACAUAUACAUACAUAUAUCUUUGGCA-------CAACC .....((..(((((((((..........)))))))))))(((((((((......)))))((((((((((((....)))))))))))).......)))).-------..... ( -30.40) >DroSec_CAF1 50419 96 - 1 CUUCCGCCCUGAGAAAAUAAUUAAGUUGUUUUUCUUAGCGCCGGCAUACGAGUAUAUGCAUAUAUGUA------C--AUAUGUACAUAUAUCCUUGGCA-------CAACC ........(((((((((((((...)))).))))))))).(((((((((......)))))(((((((((------(--....))))))))))...)))).-------..... ( -27.10) >DroSim_CAF1 52706 96 - 1 CUUCCGCCCUGAGAAAAUAAUUAAGUUGUUUUUCUUAGCGCCGGCAUACGAGUAUAUGCAUAUACAUA------U--GUACAUACAUAUAUCCUUGGCA-------CAACC .....((((((((((((((((...)))).)))))))))....((.(((...((((.((((((....))------)--))).))))...)))))..))).-------..... ( -20.60) >DroYak_CAF1 48849 95 - 1 -CUCAGCCCUGAGAAAAUAAUUAAGUUGU-UUUCUUAAGGCUGGCAUACGU----AUG--UAUAUGUA------U--GCAUUUACAUAUAUCCUUGGCAGGACCCACAACC -..(((((.((((((((((((...)))))-))))))).)))))((((((((----(..--..))))))------)--))...........((((....))))......... ( -32.40) >consensus CUUCCGCCCUGAGAAAAUAAUUAAGUUGUUUUUCUUAGCGCCGGCAUACGAGUAUAUGCAUAUAUGUA______C__AUACAUACAUAUAUCCUUGGCA_______CAACC ........(((((((((((((...)))).))))))))).(((((((((......)))))(((((((((..............)))))))))...))))............. (-14.47 = -15.71 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:24 2006