Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,504,084 – 11,504,175 |
Length | 91 |
Max. P | 0.990748 |
Location | 11,504,084 – 11,504,175 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 96.48 |
Mean single sequence MFE | -18.24 |
Consensus MFE | -16.98 |
Energy contribution | -16.78 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.07 |
Mean z-score | -1.77 |
Structure conservation index | 0.93 |
SVM decision value | 2.23 |
SVM RNA-class probability | 0.990748 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11504084 91 - 27905053 GUCAAAAAACGAUAAGCCGAAUGUGAAAUAUUUGCAUUAAGUAUUUUUAUUUGUUUCACAUUUUAUUUCAUUUUUGUUGGCCGUUUGACCC (((((...(((....(((((..((((((((..((...((((((....)))))).....))...)))))))).....))))))))))))).. ( -18.60) >DroSec_CAF1 38091 91 - 1 GUCAAAAAACGAUAAGCCGAAUGUGAAAUAUUUGCAUUAAGUAUUUUUAUUUGUUUCACAUUUUAUUUCAUUUUUGUUGGCCGUUUGACCC (((((...(((....(((((..((((((((..((...((((((....)))))).....))...)))))))).....))))))))))))).. ( -18.60) >DroSim_CAF1 39199 91 - 1 GUCAAAAAACGAUAAGCCGAAUGUGAAAUAUUUGCAUUAAGUAUUUUUAUUUGUUUCACAUUUUAUUUCAUUUUUGUUGGCCGUUUGACCC (((((...(((....(((((..((((((((..((...((((((....)))))).....))...)))))))).....))))))))))))).. ( -18.60) >DroEre_CAF1 41654 91 - 1 GUCAAAAAGAGAUAAGCCGAAUGUGAAAUAUUUGCAUUAAGUAUUUCUAUUUAUUUUACAUUUUAUUUCAUUUUUGUUGGGCGUUUGACCC ((((((.........(((.(((((((((((..((...((((((....)))))).....))...))))))))....))).))).)))))).. ( -17.50) >DroYak_CAF1 36169 91 - 1 GUCAAAAAACGAUAAGCCGAAUGUGAAAUAUUUGCAUUAAGUAUUUUUAUUUAUUUCACAUUUUAUUUUAUUUUUGUUGGGCGUUUGACCC ((((((...(((((((..((((((((((((..(((.....)))........)))))))))))).........)))))))....)))))).. ( -17.90) >consensus GUCAAAAAACGAUAAGCCGAAUGUGAAAUAUUUGCAUUAAGUAUUUUUAUUUGUUUCACAUUUUAUUUCAUUUUUGUUGGCCGUUUGACCC ((((((...(((((((..((((((((((((..(((.....)))........)))))))))))).........)))))))....)))))).. (-16.98 = -16.78 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:19 2006