Locus 4362

Sequence ID 3R_DroMel_CAF1
Location 11,496,733 – 11,496,828
Length 95
Max. P 0.687620
window7132

overview

Window 2

Location 11,496,733 – 11,496,828
Length 95
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 84.18
Mean single sequence MFE -30.05
Consensus MFE -21.85
Energy contribution -22.47
Covariance contribution 0.62
Combinations/Pair 1.07
Mean z-score -1.68
Structure conservation index 0.73
SVM decision value 0.32
SVM RNA-class probability 0.687620
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11496733 95 - 27905053
------------CAGAUACAUGAGUGGA-UGGGGUUUGAAUCGAAACUUCAACAUUCAACAUUCGGCUGCUGUUUGUGGGACUUGUCUCUCAGCUCAGCUGCACUGAC
------------(((.....((((((..-((((((((......)))))))).)))))).......((.((((.(((.((((....)))).)))..)))).)).))).. ( -30.30)
>DroSec_CAF1 30860 88 - 1
------------CAUAUACAUGAGUGGA-CGGGGUUUGAAUCGAAACUUCAA-------CAUUUGGCUGCUGUUUGUGGGACUUGUCUCUCAGAUCAGCUGCACUGAC
------------.........(((((..-.(((((((......)))))))..-------))))).((.((((((((.((((....)))).)))).)))).))...... ( -24.90)
>DroSim_CAF1 31078 89 - 1
------------CAGAUACAUGAGUGGAGUGGGGUUUGAAUCGAAACUUCAA-------CAUUCGGCUGCUGUUUGUGGGACUUGUCUCUCAGUUCAGCUGCACUGAC
------------(((.....((((((...((((((((......)))))))).-------))))))((.((((.(((.((((....)))).)))..)))).)).))).. ( -30.30)
>DroEre_CAF1 34187 100 - 1
CAGAUACGGAUACAGAUACAUGAGUGGU-CGGGGUUUUGAUCGAAACGCCAA-------CAUUCGGCUGCUGUUUGUGGGACUUGUCUCGCAGCUCAGCUGCACUGAC
............(((.....((((((..-.((.(((((....))))).))..-------))))))((.((((.((((((((....))))))))..)))).)).))).. ( -34.70)
>consensus
____________CAGAUACAUGAGUGGA_CGGGGUUUGAAUCGAAACUUCAA_______CAUUCGGCUGCUGUUUGUGGGACUUGUCUCUCAGCUCAGCUGCACUGAC
............(((.....((((((...((((((((......))))))))........))))))((.((((.(((.((((....)))).)))..)))).)).))).. (-21.85 = -22.47 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:17 2006