Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,492,814 – 11,492,921 |
Length | 107 |
Max. P | 0.749931 |
Location | 11,492,814 – 11,492,921 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 80.93 |
Mean single sequence MFE | -33.40 |
Consensus MFE | -22.76 |
Energy contribution | -24.18 |
Covariance contribution | 1.42 |
Combinations/Pair | 1.20 |
Mean z-score | -1.74 |
Structure conservation index | 0.68 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.749931 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11492814 107 - 27905053 UCUUCUCUUUAUUUUCUCGUCUCUUUGGCGGUUUCUACGCUUUGAAGAAGGGAAGAAGCCGCAGCUCCAGCGAA-ACCCAGAGAUGAUUUGUUUACAUUCUGAUGGAG ......(((((((...((((((((...(((((((((.(.((((...)))).).))))))))).((....))...-....))))))))..((....))....))))))) ( -30.40) >DroSec_CAF1 27006 107 - 1 UCUUCUCUUUAUUUUCCCGUCUCUGUGGCGGUUUCUUCGCUUUGAAGAAGGGAAGAAGCCGCAGCUCCAGCGAA-ACCCAGAGAUGAUUUGUUUACAUUCUGGUGGAG .................((((((((.((((((((((((.((((...)))).))))))))))).((....))...-.).)))))))).....(((((......))))). ( -37.30) >DroSim_CAF1 27169 107 - 1 UCUUCUCUUUAUUUUCCCGUCUCUGUGGCGGUUUCUUCGCUUUGAAGAAGGGAAGAAGCCGCAGCUCCAGCGAA-ACCCAGAGAUGAUUUGUUUACAUUCUGGUGGAG .................((((((((.((((((((((((.((((...)))).))))))))))).((....))...-.).)))))))).....(((((......))))). ( -37.30) >DroEre_CAF1 30247 106 - 1 UCUCCUCUUUAUU-UCCCGGGUCUGUGGCGGCUGCUUCGCUUUGAAGAAGGGAAGAAGCCGCAGCCCCAGCGAA-ACCCAGAGAUGAUUUGUUUACAUUCUCUUGGAG .((((......((-(((.(((.(((((((.....((((.((((...)))).))))..))))))).))).).)))-)...(((((.....((....)).))))).)))) ( -36.10) >DroYak_CAF1 24402 108 - 1 UCUCCUCUUUAUUUUCCCGGCUCUUUGGCGGCUGCUUCGCUUUGAAGAACGGAAGAAGCCGCAGCCCCAGCGAAAACCCAGAGAUGAUUUGUUUACAUUCUCUUGGAG .((((.............((.((.((((.((((((...(((((...........))))).)))))))))).))....))(((((.....((....)).))))).)))) ( -29.40) >DroAna_CAF1 114440 84 - 1 UCUUG-------CUGGCCGC-CUUUUGUCGGUCUCUGGGCUUUGAAGGCGCGAAGAAGCCGC----------------CAGGGGAGAUUUGUUUACAUUCUUCCAGAG (((..-------(((((.((-((((....((((....))))..))))))((......)).))----------------)))((((((..((....)).))))))))). ( -29.90) >consensus UCUUCUCUUUAUUUUCCCGUCUCUGUGGCGGUUUCUUCGCUUUGAAGAAGGGAAGAAGCCGCAGCUCCAGCGAA_ACCCAGAGAUGAUUUGUUUACAUUCUGGUGGAG .((((............(((((((...(((((((((((.((((...)))).))))))))))).((....))........)))))))...((....)).......)))) (-22.76 = -24.18 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:16 2006