Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,635,965 – 1,636,081 |
Length | 116 |
Max. P | 0.769245 |
Location | 1,635,965 – 1,636,081 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.64 |
Mean single sequence MFE | -25.24 |
Consensus MFE | -19.01 |
Energy contribution | -18.57 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.04 |
Mean z-score | -2.47 |
Structure conservation index | 0.75 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.769245 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1635965 116 - 27905053 AACCUGCACAUUCUUACGGUACG----UACGUACAUACAACUAUUAUAUACUCCUAUAUCAUCAUAACAUAUACAUAGGUAUGUAUGUAUGUUUGUGUGGCUCUAACGGGCGCCCGACUU .....((.......(((((.(((----(((((((((((..(((((((((...................))))).)))))))))))))))))))))))..((((....))))))....... ( -29.21) >DroSec_CAF1 15347 112 - 1 AACCUGCACAUUCUUACGGUACGUAUGUACAUACAUACAUCUAUCAUAUACUCCUAUAUCAUCAUAACAUAUA--------UGUAUGCAUGCAUGUGUGGCUCUAACGGGCGCCCGACUU ................(((...((((((....)))))).............................((((((--------((((....))))))))))((((....))))..))).... ( -25.60) >DroSim_CAF1 15295 104 - 1 AACCUGCACAUUCUUACGGUACG----UACAUACAUACAUCUAUCAUAUACUCCUAUAUCAUCAUAACAUAUA--------UGUAUG----CAUGUGUGGCUCUAACGGGCGCCCGACUU ................(((....----......(((((((.(((((((((....(((......)))...))))--------)).)))----.)))))))((((....))))..))).... ( -20.90) >consensus AACCUGCACAUUCUUACGGUACG____UACAUACAUACAUCUAUCAUAUACUCCUAUAUCAUCAUAACAUAUA________UGUAUG_AUGCAUGUGUGGCUCUAACGGGCGCCCGACUU ................(((..............(((((((.....(((((....)))))........((((((........)))))).....)))))))((((....))))..))).... (-19.01 = -18.57 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:08 2006