Locus 436

Sequence ID 3R_DroMel_CAF1
Location 1,635,965 – 1,636,081
Length 116
Max. P 0.769245
window710

overview

Window 0

Location 1,635,965 – 1,636,081
Length 116
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 87.64
Mean single sequence MFE -25.24
Consensus MFE -19.01
Energy contribution -18.57
Covariance contribution -0.44
Combinations/Pair 1.04
Mean z-score -2.47
Structure conservation index 0.75
SVM decision value 0.52
SVM RNA-class probability 0.769245
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1635965 116 - 27905053
AACCUGCACAUUCUUACGGUACG----UACGUACAUACAACUAUUAUAUACUCCUAUAUCAUCAUAACAUAUACAUAGGUAUGUAUGUAUGUUUGUGUGGCUCUAACGGGCGCCCGACUU
.....((.......(((((.(((----(((((((((((..(((((((((...................))))).)))))))))))))))))))))))..((((....))))))....... ( -29.21)
>DroSec_CAF1 15347 112 - 1
AACCUGCACAUUCUUACGGUACGUAUGUACAUACAUACAUCUAUCAUAUACUCCUAUAUCAUCAUAACAUAUA--------UGUAUGCAUGCAUGUGUGGCUCUAACGGGCGCCCGACUU
................(((...((((((....)))))).............................((((((--------((((....))))))))))((((....))))..))).... ( -25.60)
>DroSim_CAF1 15295 104 - 1
AACCUGCACAUUCUUACGGUACG----UACAUACAUACAUCUAUCAUAUACUCCUAUAUCAUCAUAACAUAUA--------UGUAUG----CAUGUGUGGCUCUAACGGGCGCCCGACUU
................(((....----......(((((((.(((((((((....(((......)))...))))--------)).)))----.)))))))((((....))))..))).... ( -20.90)
>consensus
AACCUGCACAUUCUUACGGUACG____UACAUACAUACAUCUAUCAUAUACUCCUAUAUCAUCAUAACAUAUA________UGUAUG_AUGCAUGUGUGGCUCUAACGGGCGCCCGACUU
................(((..............(((((((.....(((((....)))))........((((((........)))))).....)))))))((((....))))..))).... (-19.01 = -18.57 +  -0.44) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:08 2006