Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,486,235 – 11,486,338 |
Length | 103 |
Max. P | 0.635263 |
Location | 11,486,235 – 11,486,338 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 94.97 |
Mean single sequence MFE | -28.18 |
Consensus MFE | -23.12 |
Energy contribution | -23.20 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.09 |
Mean z-score | -1.49 |
Structure conservation index | 0.82 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.635263 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11486235 103 - 27905053 AAGACGUUGGCCAGCGAAAAGGAAAGGGGGCU-UCCAUUUGAAUGGGGGGGAGUACGGUUUUCCGGACGAGGGUUGACUUGGCUAAUGAAGAAAAAGCAGCUGU .....((..(((..((....((((((...(((-(((.(((....))).))))))....))))))...))..)))..))..((((..(........)..)))).. ( -27.00) >DroSec_CAF1 20430 102 - 1 AAGACGUUGGGCAGCGAAAAGGAAAAGGGGGU-UCCAUUUGAAUGGG-GGGAGUACGGUUUUCCGGCCGAGGGUUGACUUGGCUAAUGAAGAAAAAGCAGCUGU ..........(((((.....((((((..(..(-(((.(((....)))-.))))..)..))))))(((((((......)))))))...............))))) ( -29.40) >DroSim_CAF1 20535 103 - 1 AAGACGUUGGCCAGCGAAAAGGAAAAGGGGGU-UCCAUUUGAAUGGGGGGGAGUACGGUUCUCCGGCCGAGGGUUGACUUGGCUAAUGAAGAAAAAGCAGCUGU ....(.((((((....................-(((((....)))))((((((.....)))))))))))).)((((.(((..((.....))...)))))))... ( -27.70) >DroEre_CAF1 23865 103 - 1 AAGACGCUGGCCAGCGAAAAGGAAAAGGGGGU-UCCAUUUGAAUGGGGGGGAGGACGGUUUUCCGGCCGAGGGUUGACUUGGCUAAUGAAGAAAAAGCAGCUGU .....((((...........((((((..(..(-(((.(((....)))..))))..)..))))))(((((((......))))))).............))))... ( -28.10) >DroYak_CAF1 17831 103 - 1 AAGACGUUGGCCAGUGAAAAGGAAAAGGGGGUUUCCAUUUGAAUGGG-GGGAGGACUAUUUUCCGGCCGAGGGUUGACUUGGCUAAUGAAGAAAAAGCAGCUGU ....(.((((((..(....)((((((.((..(((((...........-)))))..)).)))))))))))).)((((.(((..((.....))...)))))))... ( -28.70) >consensus AAGACGUUGGCCAGCGAAAAGGAAAAGGGGGU_UCCAUUUGAAUGGGGGGGAGUACGGUUUUCCGGCCGAGGGUUGACUUGGCUAAUGAAGAAAAAGCAGCUGU ...........((((.....((((((..(....(((((....)))))........)..))))))(((((((......)))))))...............)))). (-23.12 = -23.20 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:13 2006