| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,476,399 – 11,476,491 |
| Length | 92 |
| Max. P | 0.843757 |
| Location | 11,476,399 – 11,476,491 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 88.49 |
| Mean single sequence MFE | -27.75 |
| Consensus MFE | -22.34 |
| Energy contribution | -22.23 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.70 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.843757 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11476399 92 + 27905053 CCUUGGAGCGGCAAAAACUCGACGCACUUUUCCAGUGCGUUUUGACAAACGACUGACAUUCAUCAGUGUCAGCCCAGUGCCGACACCCCCCA------ ....((.((((((....(..((((((((.....))))))))..)........(((((((......))))))).....))))).).)).....------ ( -29.40) >DroSec_CAF1 10585 90 + 1 CCUUGGAGCGGCAAAAACUCGACGCACUUUUCCAGUGCGUUUUGACAAACGACUGACAUUCAUCAGUGUCAGCCCAGUGCCU--ACCCCCCA------ ....((...((((....(..((((((((.....))))))))..)........(((((((......))))))).....)))).--..))....------ ( -25.80) >DroSim_CAF1 10809 90 + 1 CCUUGGAGCGGCAAAAACUCGACGCACUUUUCCAGUGCGUUUUGACAAACGACUGACAUUCAUCAGUGUCAGCCCAGUGCCU--ACCCCCCA------ ....((...((((....(..((((((((.....))))))))..)........(((((((......))))))).....)))).--..))....------ ( -25.80) >DroEre_CAF1 12872 90 + 1 CCCCGGGGCGGCAAAAACUCGACGCACUUUUCCAGUGCGUUUUGACAAACGACUGACAUUCAUCAGUGUCAGGCGAGUCCCA--AACCCCCC------ ....((((.((.....((((((((((((.....)))))))............(((((((......))))))).)))))....--..))))))------ ( -33.20) >DroYak_CAF1 8020 96 + 1 CCUUCGAGCGGCAAAAACUCGACGCACUUUUCCAGUGCGUUUUGACAAACGACUGACAUUCAUCAGUGUCAGGCCAGCCCCC--AACCCCCCACCCUU .......(((((.....(..((((((((.....))))))))..)........(((((((......)))))))))).))....--.............. ( -26.70) >DroAna_CAF1 98783 90 + 1 CCAAGGAACGGCAACAACUCGACGCACUUUUCCAGUGCGUUUUGACAAACGACUGACAUUCAUCAGUGUCAGGGCAGUACCC--CCGCCUCG------ .........(((.....(..((((((((.....))))))))..)....((..(((((((......)))))))....))....--..)))...------ ( -25.60) >consensus CCUUGGAGCGGCAAAAACUCGACGCACUUUUCCAGUGCGUUUUGACAAACGACUGACAUUCAUCAGUGUCAGCCCAGUGCCC__ACCCCCCA______ ....((.((........(..((((((((.....))))))))..)........(((((((......)))))))....)).))................. (-22.34 = -22.23 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:10 2006