Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,475,918 – 11,476,018 |
Length | 100 |
Max. P | 0.616246 |
Location | 11,475,918 – 11,476,018 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 90.11 |
Mean single sequence MFE | -25.80 |
Consensus MFE | -19.98 |
Energy contribution | -20.02 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.13 |
Mean z-score | -1.55 |
Structure conservation index | 0.77 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.616246 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11475918 100 + 27905053 CCUCAAAUGGGGAAACGCUCCCAUCAAAAGUUACGAUGGGGGGAAAGCGUUCAAAUCCCAAGUUGCAGUUCCCC-CCUUCAAGUACUCCUUCCCUAUUACU .....(((((((((..(((.........)))...((.((((((((.(((..............)))..))))))-)).)).........)))))))))... ( -29.34) >DroSec_CAF1 10100 100 + 1 CCCCAAAGGGGGAAACGCUCCCUUCAAAAGUUAGGAUGGG-GGAAAGCGUUCAAAUCCCAAGUUGCAGUUCCCCUCCUUCAAGUACUCCUUCCCUAUCACU .....(((((((.....))))))).....(..((((.(((-(((..(((..............)))..)))))))))).)..................... ( -25.74) >DroSim_CAF1 10325 101 + 1 CCCCAAGUGGGGAAACGCUCCCUUCAAAAGUUACGAUGGGGGGAAAGCGUUCAAAUCCCAAGUUGCAGUUCCCCUCCUUCAAGUACUCCUUCCCUAUCACU ......((((((((..(((.........)))...((.((((((((.(((..............)))..)))))).)).)).........)))))))).... ( -24.34) >DroEre_CAF1 12428 96 + 1 CCCCAAAUGGGGAGACGCUCCCUUCAAAAGUUGCGAAGGG-GGGAAGCGUUCAAAUCCCAAGCUGCAGUUCC----CUUCAAGUACUCAUUCCCUAUCACU ......((((((((.....((((((.........))))))-((((((((((.........))).))..))))----)............)))))))).... ( -24.90) >DroYak_CAF1 7560 96 + 1 CCCCCAAUGGGGAGACGCUCCCUUCAAAAGUUGUGAAGGG-GCAAAGCGUUCAAAUCCCAAGCUGCAGUUCC----CUUCAAGUACUCAUUCCCUAUCACU ......((((((((((((((((((((.......)))))))-....))))))..........(((..((....----))...)))......))))))).... ( -24.70) >consensus CCCCAAAUGGGGAAACGCUCCCUUCAAAAGUUACGAUGGG_GGAAAGCGUUCAAAUCCCAAGUUGCAGUUCCCC_CCUUCAAGUACUCCUUCCCUAUCACU ......(((((((((((((((((((.........)))))).....))))))............((.((........)).)).........))))))).... (-19.98 = -20.02 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:09 2006