Locus 4353

Sequence ID 3R_DroMel_CAF1
Location 11,468,875 – 11,468,966
Length 91
Max. P 0.508519
window7119

overview

Window 9

Location 11,468,875 – 11,468,966
Length 91
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 97.09
Mean single sequence MFE -28.20
Consensus MFE -27.06
Energy contribution -27.06
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -0.72
Structure conservation index 0.96
SVM decision value -0.05
SVM RNA-class probability 0.508519
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11468875 91 + 27905053
--CAGAGGCGCAACCCAACGCAUUGAUGUCGUUUGUCGUCCGUCUGGCUUAUCGCCACGCACUUAUCUUCCUGGCUGACGACAGGCGGAUAAU
--.....(((........))).......((((((((((((.(((((((.....))))...............))).))))))))))))..... ( -27.06)
>DroSec_CAF1 3033 91 + 1
--CAGAGGCGCAACCCAACGCAUUGAUGUCGUUUGUCGUCCGUCUGGCUUAUCGCCACGCACUUAUCUUCCUGGCUGACGACAGGCGGAUAAU
--.....(((........))).......((((((((((((.(((((((.....))))...............))).))))))))))))..... ( -27.06)
>DroSim_CAF1 3247 91 + 1
--CAGAGGCGCAACCCAACGCAUUGAUGUCGUUUGUCGUCCGUCUGGCUUAUCGCCACGCACUUAUCUUCCUGGCUGACGACAGGCGGAUAAU
--.....(((........))).......((((((((((((.(((((((.....))))...............))).))))))))))))..... ( -27.06)
>DroEre_CAF1 5010 93 + 1
GGCAGAGGCGCAACCCAACGCAUUGAUGUCGUUUGUCGUCCGUCUGGCUUAUCGCCACGCACUUAUCUUCCUGGCUGACGACAGGCGGAUAAU
((((...(((........))).....))))((((((((((.(((((((.....))))...............))).))))))))))....... ( -28.96)
>DroYak_CAF1 370 91 + 1
--CAGAGGCGCAACCCAACGCAUUGAUGUCGUUUGUCGUCCGUCUGGCUUAUCGCCACGCACUUAUCUUCCUGGCUGACGACAGGCGGAUAAU
--.....(((........))).......((((((((((((.(((((((.....))))...............))).))))))))))))..... ( -27.06)
>DroAna_CAF1 91856 91 + 1
--CGGAGGCGAAACCCAACGCAUCCAUGUCGUUUGUCGUCUGUCUGGCUUAUCGCCACGCACUUAUCUUCCUGGCUGACGACAGGCGGAGAAU
--.(((.(((........))).)))...(((((((((((((((.((((.....)))).)))....((.....))..))))))))))))..... ( -32.00)
>consensus
__CAGAGGCGCAACCCAACGCAUUGAUGUCGUUUGUCGUCCGUCUGGCUUAUCGCCACGCACUUAUCUUCCUGGCUGACGACAGGCGGAUAAU
.......(((........))).......((((((((((((.(((((((.....))))...............))).))))))))))))..... (-27.06 = -27.06 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:05 2006