Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,467,645 – 11,467,748 |
Length | 103 |
Max. P | 0.875159 |
Location | 11,467,645 – 11,467,748 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 99.35 |
Mean single sequence MFE | -23.60 |
Consensus MFE | -23.60 |
Energy contribution | -23.60 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.89 |
Structure conservation index | 1.00 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.875159 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11467645 103 + 27905053 AAAAUUCAGUUUAGUGGAAAAUUAUAAAAAUUAUAUUGCCACAUUUUGAAUUGCACUCGGCCUAUGCCUAAUUGAAUAUUUAUCAAAUGGAUAGUCUGGGGGC ..(((((((..(.((((.....((((.....))))...)))))..)))))))((.(((((.((((.((...((((.......))))..)))))).))))).)) ( -23.60) >DroSec_CAF1 1831 103 + 1 CAAAUUCAGUUUAGUGGAAAAUUAUAAAAAUUAUAUUGCCACAUUUUGAAUUGCACUCGGCCUAUGCCUAAUUGAAUAUUUAUCAAAUGGAUAGUCUGGGGGC ..(((((((..(.((((.....((((.....))))...)))))..)))))))((.(((((.((((.((...((((.......))))..)))))).))))).)) ( -23.60) >DroSim_CAF1 2044 103 + 1 CAAAUUCAGUUUAGUGGAAAAUUAUAAAAAUUAUAUUGCCACAUUUUGAAUUGCACUCGGCCUAUGCCUAAUUGAAUAUUUAUCAAAUGGAUAGUCUGGGGGC ..(((((((..(.((((.....((((.....))))...)))))..)))))))((.(((((.((((.((...((((.......))))..)))))).))))).)) ( -23.60) >consensus CAAAUUCAGUUUAGUGGAAAAUUAUAAAAAUUAUAUUGCCACAUUUUGAAUUGCACUCGGCCUAUGCCUAAUUGAAUAUUUAUCAAAUGGAUAGUCUGGGGGC ..(((((((..(.((((.....((((.....))))...)))))..)))))))((.(((((.((((.((...((((.......))))..)))))).))))).)) (-23.60 = -23.60 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:04 2006