Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,467,225 – 11,467,363 |
Length | 138 |
Max. P | 0.790662 |
Location | 11,467,225 – 11,467,333 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 83.55 |
Mean single sequence MFE | -27.15 |
Consensus MFE | -17.14 |
Energy contribution | -17.10 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.19 |
Mean z-score | -2.21 |
Structure conservation index | 0.63 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.790662 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11467225 108 + 27905053 AAGCAACAAAAAGGG-AAAAGGUGUUAGAAAUCAAAGAACUUGGCGCCGCCUUAAAGAUGCAACAGCCAACGAGCCAUGGAAGUGGCAUAUGUUGGCCAUA----UACAUAAU ..(((.(....((((-....((((((((............)))))))).))))...).)))....(((((((.(((((....)))))...)))))))....----........ ( -29.70) >DroSec_CAF1 1415 108 + 1 AAGCAACAAAAUGGG-AAAAGGUGAAAGAAAUCAAAGAACUUGGCGCCGCCUUAAAGAUGCAACAGCCAACGAGCCAUGGAAGUGGCAUGUGUUGGCCAUA----GACAUAAU ..(((.......(((-....((((.(((...........)))..)))).)))......)))....(((((((.(((((....)))))...)))))))....----........ ( -28.62) >DroSim_CAF1 1615 112 + 1 AAGCAACAAAAUGGG-AAAAGGUGUUAGAAAUCAAAGAACUUGGCGCCGCCUUAAAGAUGCAACAGCCAACGAGCCAUGGAAGUGGCAUGUGUUGGCCAUAUAUAUACAUAAU ..(((.......(((-....((((((((............)))))))).)))......)))....(((((((.(((((....)))))...)))))))................ ( -30.72) >DroEre_CAF1 3387 108 + 1 AAGCAACAAAGAGGG-AAAAGGUGUUAGAAAUCAAAGAACUUGGCGCCGUCUUAAAGAUGCAACAAGCAACCAGCCAACGGAGUGGCAUGUGUUGGCCACA----UACAUAAU ............(((-(...((((((((............)))))))).)).......(((.....))).)).(((((((.(......).)))))))....----........ ( -22.80) >DroAna_CAF1 90364 94 + 1 UGGCCAUGAAAAGGGAAAAAGGUGUUAGAAAUCAAAGAACUUGGCGCCGCCUUCAAAAGGAAACC---------------GAGUGGCAUGUGUUGGCCACA----UACAUAAG ((((((..............((((((((............))))))))((((((....(....).---------------))).)))......))))))..----........ ( -23.90) >consensus AAGCAACAAAAAGGG_AAAAGGUGUUAGAAAUCAAAGAACUUGGCGCCGCCUUAAAGAUGCAACAGCCAACGAGCCAUGGAAGUGGCAUGUGUUGGCCAUA____UACAUAAU ..(((.(....((((.....((((((((............)))))))).))))...).))).....................(((((........)))))............. (-17.14 = -17.10 + -0.04)
Location | 11,467,264 – 11,467,363 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 82.50 |
Mean single sequence MFE | -28.34 |
Consensus MFE | -15.04 |
Energy contribution | -17.44 |
Covariance contribution | 2.40 |
Combinations/Pair | 1.19 |
Mean z-score | -2.36 |
Structure conservation index | 0.53 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.738124 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11467264 99 - 27905053 UUAAAGCCCAUAAAAGGAGCCUUAAAUAAAAUUAUGUA----UAUGGCCAACAUAUGCCACUUCCAUGGCUCGUUGGCUGUUGCAUCUUUAAGGCGGCGCCAA .....((((......)..((((((((.......(((((----.(((((((((....((((......))))..)))))))))))))).)))))))))))..... ( -30.90) >DroSec_CAF1 1454 99 - 1 UUAAAGGCCAUAAAAGGAGCCUUAAAUAAAAUUAUGUC----UAUGGCCAACACAUGCCACUUCCAUGGCUCGUUGGCUGUUGCAUCUUUAAGGCGGCGCCAA .....((((.........((((((((.......((((.----.(((((((((....((((......))))..))))))))).)))).)))))))).).))).. ( -30.10) >DroSim_CAF1 1654 103 - 1 UUAAAGGCCAUAAAAGGAGCCUUAAAUAAAAUUAUGUAUAUAUAUGGCCAACACAUGCCACUUCCAUGGCUCGUUGGCUGUUGCAUCUUUAAGGCGGCGCCAA .....((((.........((((((((.......(((((.....(((((((((....((((......))))..)))))))))))))).)))))))).).))).. ( -28.90) >DroEre_CAF1 3426 99 - 1 UUAAAGGCCAUAAAGGGAGUCUUCAAUAAAAUUAUGUA----UGUGGCCAACACAUGCCACUCCGUUGGCUGGUUGCUUGUUGCAUCUUUAAGACGGCGCCAA .....(((....((.(((((.....(((....)))(((----((((.....))))))).))))).)).((((..(((.....)))((.....))))))))).. ( -25.80) >DroAna_CAF1 90404 84 - 1 UUAAAGGCCAUAAAAGGAGUCUCUACGAGACUUAUGUA----UGUGGCCAACACAUGCCACUC---------------GGUUUCCUUUUGAAGGCGGCGCCAA ......(((.(((((((((((((...)))))....(((----((((.....))))))).....---------------....))))))))..)))........ ( -26.00) >consensus UUAAAGGCCAUAAAAGGAGCCUUAAAUAAAAUUAUGUA____UAUGGCCAACACAUGCCACUUCCAUGGCUCGUUGGCUGUUGCAUCUUUAAGGCGGCGCCAA ...............((.((((((((.......(((((.....(..((((((....((((......))))..))))))..)))))).))))))))....)).. (-15.04 = -17.44 + 2.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:03 2006