Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,466,683 – 11,466,779 |
Length | 96 |
Max. P | 0.638699 |
Location | 11,466,683 – 11,466,779 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 86.16 |
Mean single sequence MFE | -23.18 |
Consensus MFE | -15.18 |
Energy contribution | -15.54 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.18 |
Mean z-score | -2.10 |
Structure conservation index | 0.65 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.638699 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11466683 96 + 27905053 AAGUGAGUGCACAUAAAAUUUGUAAUCACUUGGAGUACUUACA-UGCAUAAGAAAU---------GUUUCUUUUGUUUGAAGGGUUUCCCCAACC-CAAUUUCCCCA ((((((.((((.........)))).))))))((((......((-.(((.(((((..---------..))))).))).))..(((((.....))))-)...))))... ( -22.60) >DroSec_CAF1 865 96 + 1 AAGUGAGUGCACAUAAAAUUUGUAAUCACUUGGAGUACUUACA-UGCAUAAGAAAU---------GUUUCUUUUGUUUGAAGGGUUUCCCCAACC-CAAUUUCCCCG ((((((.((((.........)))).))))))((((......((-.(((.(((((..---------..))))).))).))..(((((.....))))-)...))))... ( -22.60) >DroSim_CAF1 1065 96 + 1 AAGUGAGUGCACAUAAAAUUUGUAAUCACUUGGAGUACUUACA-UGCAUAAGAAAU---------GUUUCUUUUGUUUGAAGGGUUACCCUAACC-CAAUUUCCCCG ((((((.((((.........)))).))))))((((......((-.(((.(((((..---------..))))).))).))..((((((...)))))-)...))))... ( -23.20) >DroEre_CAF1 2819 96 + 1 AAGUGAGUGCACAUAAAAUGUGUAAUCACUCGGAGUACUUGCA-UGCAUAAGAAAU---------GUUUCUUUUGUUUGAAGGGUUUCUCCAACC-AAAUAUCUCCC .(((((.(((((((...))))))).))))).((((..(((.((-.(((.(((((..---------..))))).))).)))))((((.....))))-......)))). ( -27.30) >DroAna_CAF1 89751 102 + 1 A----AGUGCACAUAAAAU-UGUAAUCACUCGAAGUACUCACAUUGCAUAAGGAAUUUUUUGUGAGUUUCUUUUGUUUGAAGGGUUUCUGCCCCCAAAAUUUCUCCC .----((((.(((......-)))...)))).(((((.....((..(((.(((((((((.....))))))))).))).))..((((....)))).....))))).... ( -20.20) >consensus AAGUGAGUGCACAUAAAAUUUGUAAUCACUUGGAGUACUUACA_UGCAUAAGAAAU_________GUUUCUUUUGUUUGAAGGGUUUCCCCAACC_CAAUUUCCCCC ..(((((((((((.......)))..((....)).))))))))...(((.(((((((((.....))))))))).))).....(((....)))................ (-15.18 = -15.54 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:01 2006