Locus 435

Sequence ID 3R_DroMel_CAF1
Location 1,634,698 – 1,634,796
Length 98
Max. P 0.854766
window709

overview

Window 9

Location 1,634,698 – 1,634,796
Length 98
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 77.23
Mean single sequence MFE -32.95
Consensus MFE -18.72
Energy contribution -19.12
Covariance contribution 0.39
Combinations/Pair 1.24
Mean z-score -1.93
Structure conservation index 0.57
SVM decision value 0.80
SVM RNA-class probability 0.854766
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1634698 98 - 27905053
CGCGAUGCAAAAAUAUUUUCGCAUUUCAAAUGCUUGUGGUUGCAACUGCAACUG------------------CGACUGCGAUGGCUGAUUGCGGUUGG-UUGUGUGGGUGGGUGGCU
.((.((.((...((((..((((((.....))))..(..(((((....)))))..------------------)(((((((((.....)))))))))))-..))))...)).)).)). ( -33.90)
>DroSec_CAF1 14248 94 - 1
CGCGAUGCAAAAAUAUUUUCGCAUUUCAAAUGCUUGUGGUUGCAACUGCAACUG------------------CGACUGCGAUGGCUGAUUGCGGUUGG-UUGUGUGG----GUGGCU
.((.((.((..(((......((((.....))))..(..(((((....)))))..------------------)(((((((((.....))))))))).)-))...)).----)).)). ( -30.30)
>DroSim_CAF1 14172 98 - 1
CGCGAUGCAAAAAUAUUUUCGCAUUUCAAAUGCUUGUGGUUGCAACUGCAACUG------------------CGACUGCGAUGGCUGAUUGCGGUUGG-UUGUGUGGGUGGGUGGCU
.((.((.((...((((..((((((.....))))..(..(((((....)))))..------------------)(((((((((.....)))))))))))-..))))...)).)).)). ( -33.90)
>DroEre_CAF1 15334 84 - 1
CGCGAUGCAAAAAUAUUUUCGCAUUUCAAAUGCCUGUGGUUGCAACUGCAAC------------------------UGCGAUGGCUGAUUGCGGUUG---------GGUGGCUGGCU
.((.((.(((........(((((..(((...(((((..(((((....)))))------------------------..))..)))))).))))))))---------.)).))..... ( -27.10)
>DroYak_CAF1 12971 108 - 1
CGCGAUGCAAAAAUGUUUUCGCAUUUGAAAUGCUUGUGGUUGCAACUGCAACUGCAACUGCAAAUGCGAUUGCGACUGCGACGGCUGAUUGCGGUUG---------UGUGGGUGGCU
.((.((.((....(((..(((((((((....(.(((..(((((....)))))..))))..)))))))))..)))...(((((.((.....)).))))---------).)).)).)). ( -43.70)
>DroAna_CAF1 14312 93 - 1
CGCGAUGCGAAAAUAUUUUCGCAUUUCAAAUGCUUGUGGUUGCAACAA------------------------CGCCCGCAUGGGCUGGGUGCGGUCGAGAGGUCUACAUAUGUGUCU
.(.(((((((((....))))))))).)..((((.((((...(((.(..------------------------.((((....))))..).)))(..(....)..)..)))).)))).. ( -28.80)
>consensus
CGCGAUGCAAAAAUAUUUUCGCAUUUCAAAUGCUUGUGGUUGCAACUGCAACUG__________________CGACUGCGAUGGCUGAUUGCGGUUGG_UUGUGUGGGUGGGUGGCU
(((..(((((..(((.....((((.....)))).)))..)))))............................((((((((((.....))))))))))..............)))... (-18.72 = -19.12 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:07 2006