Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,465,187 – 11,465,305 |
Length | 118 |
Max. P | 0.773479 |
Location | 11,465,187 – 11,465,305 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.50 |
Mean single sequence MFE | -25.38 |
Consensus MFE | -23.58 |
Energy contribution | -23.20 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.03 |
Mean z-score | -1.78 |
Structure conservation index | 0.93 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.773479 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11465187 118 - 27905053 --GUUAUGAUUUAGCUUCCAUAUGCUUGUCUAACCGCAGACAUAAAUUACAUGGAAAAUAUUUGCCGCUCUACAAAUAUUGCGGCACUUAAGCACAAAUGCUGCCACCCACCGGGCACCC --((((.....))))((((((((...(((((......)))))...))...))))))..((..((((((............))))))..))((((....))))(((........))).... ( -27.50) >DroSec_CAF1 199050 118 - 1 --GUUAUGAUUUAGCUUCCAUAUGCUUGUCUAACCGCAGACAUAAAUUACAUGGAAAAUAUUUGCCGCUCUACAAAUAUUGCGGCACUUAAGCACAAAUGCUGCCACCCACCGGCCACCC --((((.....))))((((((((...(((((......)))))...))...))))))..((..((((((............))))))..))((((....))))(((.......)))..... ( -26.40) >DroSim_CAF1 194219 118 - 1 --GUUAUGAUUUAGCUUCCAUAUGCUUGUCUAACCGCAGACAUAAAUUACAUGGAAAAUAUUUGCCGCUCUACAAAUAUUGCGGCACUUAAGCACAAAUGCUGCCACCCACCGACCACCC --(((.(((((((((........)).(((((......))))))))))))..(((....((..((((((............))))))..))((((....)))).....)))..)))..... ( -23.70) >DroYak_CAF1 191349 120 - 1 UACUUAUGAUUUAGGUUCCAUAUGCUUGUCUAACCGCAGACAUAAAUUACAUGGAAAAUAUUUGCCGCUCUACAAAUAUUGCGGCACUUAAGCACAAAUGCUGCCACCCACCGCUCCCCC .............((((((((((...(((((......)))))...))...)))))...((..((((((............))))))..))((((....)))))))............... ( -23.90) >consensus __GUUAUGAUUUAGCUUCCAUAUGCUUGUCUAACCGCAGACAUAAAUUACAUGGAAAAUAUUUGCCGCUCUACAAAUAUUGCGGCACUUAAGCACAAAUGCUGCCACCCACCGGCCACCC ..((((.....))))((((((((...(((((......)))))...))...))))))..((..((((((............))))))..))((((....)))).................. (-23.58 = -23.20 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:00 2006