Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,465,028 – 11,465,148 |
Length | 120 |
Max. P | 0.522530 |
Location | 11,465,028 – 11,465,148 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.86 |
Mean single sequence MFE | -42.95 |
Consensus MFE | -33.53 |
Energy contribution | -33.15 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.13 |
Mean z-score | -1.43 |
Structure conservation index | 0.78 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.522530 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11465028 120 + 27905053 CGCAGCGAAAGUGCGCGGAAGUAAUAAAACAUGCGUGAGGCGCGGAGGCUGCAACUUUGCGACGCUUGUUGCACUCGCUAUUGCAAUUGUCUGGAAAGUGUUGCGACAUUGGUGGUGCAG .(((.(....))))((....)).....((((.((((....(((((((.......))))))))))).))))((((.((((((((((((...((....)).)))))))...))))))))).. ( -43.80) >DroSec_CAF1 198902 108 + 1 CGCAGCGAAAGUGCGCGGAAGUAAUAAAACAUGCGGGAGGCGCGAAGGCUGCAACUUUGCGAUGCUUGUUGCACUC------------GUCUGGAAAGUGUUGCGACAUUGGUGGCGCAG ..((((((..((((((....)).....((((.(((.....(((((((.......))))))).))).))))))))))------------).)))....((((..(.......)..)))).. ( -37.00) >DroSim_CAF1 194059 120 + 1 CGCAGCGAAAGUGCGCGGAAGUAAUAAAACAUGCGGGAGGCGCGGAGGCUGCAACUUUGCGACGCUUGUUGCACUCGCUAUUGCAAUUGUCUGGAAAGUGUUGCGACAUUGGUGGUGCAG .(((.(....))))((....)).....((((.(((.....(((((((.......))))))).))).))))((((.((((((((((((...((....)).)))))))...))))))))).. ( -43.90) >DroYak_CAF1 191192 120 + 1 CGAAGCGAAAGUGCGCGGAAGUAAUAAAACAUGCGGGCGGCGCGGGGGCUGCAACUUCGCGACGCUUGUUGCACUCGCUGCUGCAAUUGUCUGGAAAGUGUUGCGACAUUGGCGGUGCCC ....(((...((.((((...((......)).)))).))..)))(((.(((((....((((((((((((((((((.....).))))))........))))))))))).....))))).))) ( -47.10) >consensus CGCAGCGAAAGUGCGCGGAAGUAAUAAAACAUGCGGGAGGCGCGGAGGCUGCAACUUUGCGACGCUUGUUGCACUCGCUAUUGCAAUUGUCUGGAAAGUGUUGCGACAUUGGUGGUGCAG (((((((..(((((((....)).....((((.(((.....(((((((.......))))))).))).))))))))).((....))..............)))))))............... (-33.53 = -33.15 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:59 2006