Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,464,441 – 11,464,533 |
Length | 92 |
Max. P | 0.584232 |
Location | 11,464,441 – 11,464,533 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.34 |
Mean single sequence MFE | -27.12 |
Consensus MFE | -14.20 |
Energy contribution | -14.45 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.18 |
Mean z-score | -2.47 |
Structure conservation index | 0.52 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.584232 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11464441 92 + 27905053 AAGGGA---------------AAAAUAUGAAAAAGCCAGCAGGCAGGGAGGAAAUGACGGG-------------GGAAACAGCGAAAGUGAACAGUUGCCAGGGUCUGGGCGGUGUAUCC ......---------------.............(((..(((((..((..(...((.....-------------(....).((....))...)).)..))...))))))))......... ( -18.80) >DroSec_CAF1 198241 99 + 1 -AGGGG---------------AAAAUAUGAAAAAGCCAGCAGGAUGCGAGGAAAUGACGGG-----GGAGCUGGGGAAACAGCGAAAGUGAACAGUUGUCAGGGUCUGGGCGGUGUAUCC -.....---------------....................(((((((..(....(((..(-----(.(((((.(....).((....))...))))).))...)))....)..))))))) ( -24.80) >DroSim_CAF1 193389 99 + 1 -AGGGA---------------AAAAUAUGAAAAAGCCAGCAGGAUGCGAGGAAAUGACGGG-----GGAGCUGGGGAAACAGCGAAAGUGAACAGUUGCCAGGGUCUGGGCGGUGUAUCC -.....---------------....................(((((((..(....(((..(-----(.(((((.(....).((....))...))))).))...)))....)..))))))) ( -27.20) >DroYak_CAF1 190485 119 + 1 -ACGGGAAAUACAUAUAUGAAAAAAUAUGAAAAAGCCAGCAGGCCGGGAGGAAACGAGGGGGGGAGGGAGCUGGGGAAACAGCGAAAGUGAACAGUUGCCAGGGUCUGGGCGGUGUAUCC -...(((.((((.(((((......))))).....(((..((((((....(....)..........((.(((((.(....).((....))...))))).))..))))))))).)))).))) ( -37.70) >consensus _AGGGA_______________AAAAUAUGAAAAAGCCAGCAGGAUGCGAGGAAAUGACGGG_____GGAGCUGGGGAAACAGCGAAAGUGAACAGUUGCCAGGGUCUGGGCGGUGUAUCC ..................................(((..((((((....((.(((...................(....).((....)).....))).))..)))))))))......... (-14.20 = -14.45 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:52 2006