Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,464,261 – 11,464,361 |
Length | 100 |
Max. P | 0.551855 |
Location | 11,464,261 – 11,464,361 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 83.89 |
Mean single sequence MFE | -22.80 |
Consensus MFE | -13.22 |
Energy contribution | -14.00 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.06 |
Mean z-score | -2.58 |
Structure conservation index | 0.58 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.551855 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11464261 100 + 27905053 G--GGAAAAAAUAACACAAAAAAAUGGAGUUUCAUUUGCUCCAUUUUUUUUUUUUUUUAUUCGUAAAUUUACUGGACAGUUUCUUCUUGAGCUCUCUGCAAA .--((((((((......(((((((((((((.......)))))))))))))))))))))...............(((.(((((......))))).)))..... ( -19.60) >DroSec_CAF1 198069 92 + 1 G---GAAAAAAUAACACAAA-AAAUGGAGUUUCAUUUGCUCCAUUUUUUUUUUUUU-----UGCAAAUGUACUGUACUGUUCCUUCUGGAGCUCUCUGCA-A (---.((((((......(((-(((((((((.......))))))))))))..)))))-----).)...((((..(....(((((....))))).)..))))-. ( -23.70) >DroSim_CAF1 193217 92 + 1 GGGGGAAAAAAUAACACAAA-AAAUGGAGAUUCAUUUGCUCCAUUUUU----UUCU-----UGCAAAUGUAGUGGACUGUUCCUUCUGGAGCUCUCUGCAAA (.(((((((((.........-..((((((.........))))))))))----))))-----).).......(..((..(((((....)))))..))..)... ( -25.10) >consensus G__GGAAAAAAUAACACAAA_AAAUGGAGUUUCAUUUGCUCCAUUUUUUUUUUUUU_____UGCAAAUGUACUGGACUGUUCCUUCUGGAGCUCUCUGCAAA .....................(((((((((.......)))))))))...........................(((..(((((....)))))..)))..... (-13.22 = -14.00 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:51 2006